Metabolites Biological Role
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1. Compound set
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supported compounds IDs
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2. Annotations
Select the annotations you want to analyze.
BioCyc Pathways
SMPDB pathways (HMDB)
SMPDB pathways (YMDB)
SMPDB pathways (ECMDB)
UniPathway pathways
KEGG pathways
KEGG modules
Enzyme interactions (ECMDB)
Enzyme interactions (YMDB)
Enzyme interactions (KEGG)
Enzyme interactions (BioCyc)
Protein interactions (BioCyc)
Protein interactions (MATADOR)
Protein interactions (HMDB)
Protein interactions (YMDB)
Protein interactions (ECMDB)
Other interactions (KEGG) (Bioactive peptides, Lipids etc.)
ChEBI roles (biochemical, chemical and application)
HMDB biofunctions
KEGG roles
Tissue location (HMDB)
Biofluid location (HMDB)
Cellular location (HMDB)
Cellular location (ECMDB)
Cellular location (YMDB)
Indication (DrugBank)
Pharmacological actions (MeSH)
Diseases (CTD)
Diseases (HMDB)
ATC code (Matador)
HMDB taxonomy
MeSH hierarchy
Lipid Maps Taxonomy
YMDB taxonomy
KEGG Classification
3. Background set
The
enrichment analysis
can be computed using a pre-compiled reference, or alternatively you can provide a background set. (Note that
organism-based backgrounds
are available only for certain KEGG and Biocyc annotations).
Full database
Organism-dependent
Acaryochloris marina
Accumulibacter phosphatis
Acetobacter pasteurianus
Acholeplasma laidlawii
Acidaminococcus fermentans
Acidimicrobium ferrooxidans DSM 10331
Acidiphilium cryptum JF-5
Acidithiobacillus ferrooxidans ATCC 23270
Acidithiobacillus ferrooxidans ATCC 53993
Acidobacteria bacterium
Acidobacterium capsulatum
Acidothermus cellulolyticus
Acidovorax avenae
Acidovorax ebreus
Acidovorax sp. JS42
Aciduliprofundum boonei
Acinetobacter baumannii AB0057
Acinetobacter baumannii AB307-0294
Acinetobacter baumannii ACICU
Acinetobacter baumannii ATCC 17978
Acinetobacter baumannii AYE
Acinetobacter baumannii SDF
Acinetobacter sp. ADP1
Acinetobacter sp. DR1
Actinobacillus pleuropneumoniae AP76 (serotype 7)
Actinobacillus pleuropneumoniae JL03 (serotype 3)
Actinobacillus pleuropneumoniae L20 (serotype 5b)
Actinobacillus succinogenes
Actinosynnema mirum
Acyrthosiphon pisum (pea aphid)
Aedes aegypti (yellow fever mosquito)
Aeromonas hydrophila
Aeromonas salmonicida
Aeropyrum pernix
Aggregatibacter actinomycetemcomitans
Aggregatibacter aphrophilus
Agrobacterium radiobacter K84
Agrobacterium tumefaciens C58
Agrobacterium tumefaciens C58 (Cereon)
Agrobacterium vitis S4
Akkermansia muciniphila
Alcanivorax borkumensis
Alicyclobacillus acidocaldarius
Aliivibrio salmonicida LFI1238
Alkalilimnicola ehrlichei
Alkaliphilus metalliredigens
Alkaliphilus oremlandii
Allochromatium vinosum
Alpha proteobacterium IMCC1322
Alteromonas macleodii
Aminobacterium colombiense
Ammonifex degensii
Anabaena sp. PCC7120
Anabaena variabilis
Anaerocellum thermophilum
Anaerococcus prevotii
Anaeromyxobacter dehalogenans 2CP-1
Anaeromyxobacter dehalogenans 2CP-C
Anaeromyxobacter sp. Fw109-5
Anaeromyxobacter sp. K
Anaplasma centrale
Anaplasma marginale Florida
Anaplasma marginale St. Maries
Anaplasma phagocytophilum
Anopheles gambiae (mosquito)
Anoxybacillus flavithermus
Apis mellifera (honey bee)
Aquifex aeolicus
Arabidopsis thaliana (thale cress)
Arcanobacterium haemolyticum
Archaeoglobus fulgidus
Archaeoglobus profundus
Arcobacter butzleri
Arcobacter nitrofigilis
Aromatoleum aromaticum EbN1
Arthrobacter aurescens
Arthrobacter chlorophenolicus
Arthrobacter sp. FB24
Ashbya gossypii (Eremothecium gossypii)
Aspergillus clavatus
Aspergillus flavus
Aspergillus fumigatus
Aspergillus nidulans
Aspergillus niger
Aspergillus oryzae
Atopobium parvulum
Aurantimonas manganoxydans SI85-9A1
Azoarcus sp. BH72
Azorhizobium caulinodans
Azospirillum sp. B510
Azotobacter vinelandii
Babesia bovis
Bacillus amyloliquefaciens
Bacillus anthracis A0248
Bacillus anthracis A2012
Bacillus anthracis Ames
Bacillus anthracis Ames 0581
Bacillus anthracis CDC 684
Bacillus anthracis Sterne
Bacillus cereus 03BB102
Bacillus cereus AH187
Bacillus cereus AH820
Bacillus cereus ATCC 10987
Bacillus cereus ATCC 14579
Bacillus cereus B4264
Bacillus cereus G9842
Bacillus cereus Q1
Bacillus cereus ZK
Bacillus clausii
Bacillus cytotoxis NVH 391-98
Bacillus halodurans
Bacillus licheniformis ATCC 14580
Bacillus licheniformis DSM13
Bacillus megaterium DSM319
Bacillus megaterium QM B1551
Bacillus pseudofirmus
Bacillus pumilus
Bacillus selenitireducens
Bacillus subtilis
Bacillus thuringiensis 97-27
Bacillus thuringiensis Al Hakam
Bacillus thuringiensis BMB171
Bacillus tusciae
Bacillus weihenstephanensis
Bacteroides fragilis NCTC9343
Bacteroides fragilis YCH46
Bacteroides thetaiotaomicron
Bacteroides vulgatus
Bartonella bacilliformis
Bartonella grahamii
Bartonella henselae
Bartonella quintana
Bartonella tribocorum
Baumannia cicadellinicola
Bdellovibrio bacteriovorus
Beijerinckia indica
Beutenbergia cavernae
Bifidobacterium adolescentis
Bifidobacterium animalis subsp. lactis AD011
Bifidobacterium animalis subsp. lactis Bl-04
Bifidobacterium animalis subsp. lactis DSM 10140
Bifidobacterium dentium
Bifidobacterium longum DJO10A
Bifidobacterium longum NCC2705
Bifidobacterium longum subsp. infantis ATCC 15697
Bifidobacterium longum subsp. longum JDM301
Blattabacterium sp. (Blattella germanica)
Blattabacterium sp. (Periplaneta americana)
Bordetella avium
Bordetella bronchiseptica
Bordetella parapertussis
Bordetella pertussis
Bordetella petrii
Borrelia afzelii
Borrelia burgdorferi B31
Borrelia burgdorferi ZS7
Borrelia duttonii
Borrelia garinii
Borrelia hermsii
Borrelia recurrentis
Borrelia turicatae
Bos taurus (cow)
Botryotinia fuckeliana
Brachybacterium faecium
Brachyspira hyodysenteriae
Brachyspira murdochii
Bradyrhizobium japonicum
Bradyrhizobium sp. BTAi1
Bradyrhizobium sp. ORS278
Branchiostoma floridae (Florida lancelet)
Brevibacillus brevis
Brucella abortus 9-941
Brucella abortus S19
Brucella canis
Brucella melitensis 16M
Brucella melitensis ATCC 23457
Brucella melitensis biovar Abortus
Brucella microti
Brucella ovis
Brucella suis 1330
Brucella suis ATCC 23445
Brugia malayi (filaria)
Buchnera aphidicola 5A
Buchnera aphidicola APS
Buchnera aphidicola Bp
Buchnera aphidicola Cc
Buchnera aphidicola Sg
Buchnera aphidicola Tuc7
Burkholderia ambifaria MC40-6
Burkholderia cenocepacia AU1054
Burkholderia cenocepacia HI2424
Burkholderia cenocepacia J2315
Burkholderia cenocepacia MC0-3
Burkholderia cepacia
Burkholderia glumae
Burkholderia mallei ATCC 23344
Burkholderia mallei NCTC 10229
Burkholderia mallei NCTC 10247
Burkholderia mallei SAVP1
Burkholderia multivorans ATCC 17616 (JGI)
Burkholderia multivorans ATCC 17616 (Tohoku)
Burkholderia phymatum
Burkholderia phytofirmans
Burkholderia pseudomallei 1106a
Burkholderia pseudomallei 1710b
Burkholderia pseudomallei 668
Burkholderia pseudomallei K96243
Burkholderia pseudomallei MSHR346
Burkholderia sp. 383
Burkholderia sp. CCGE1002
Burkholderia thailandensis
Burkholderia vietnamiensis
Burkholderia xenovorans
Caenorhabditis briggsae
Caenorhabditis elegans (nematode)
Caldicellulosiruptor saccharolyticus
Caldivirga maquilingensis
Campylobacter concisus 13826
Campylobacter curvus
Campylobacter fetus
Campylobacter hominis ATCC BAA-381
Campylobacter jejuni 81-176
Campylobacter jejuni 81116
Campylobacter jejuni NCTC11168
Campylobacter jejuni RM1221
Campylobacter jejuni subsp. doylei 269.97
Campylobacter lari
Candida albicans
Candida dubliniensis
Candida glabrata
Candida tropicalis
Candidatus Amoebophilus asiaticus
Candidatus Azobacteroides pseudotrichonymphae
Candidatus Blochmannia floridanus
Candidatus Blochmannia pennsylvanicus
Candidatus Carsonella ruddii
Candidatus Desulforudis audaxviator
Candidatus Hamiltonella defensa
Candidatus Hodgkinia cicadicola
Candidatus Korarchaeum cryptofilum
Candidatus Liberibacter asiaticus
Candidatus Methanoregula boonei
Candidatus Methanosphaerula palustris
Candidatus Pelagibacter ubique
Candidatus Phytoplasma australiense
Candidatus Phytoplasma mali
Candidatus Protochlamydia amoebophila
Candidatus Riesia pediculicola
Candidatus Ruthia magnifica
Candidatus Sulcia muelleri DMIN
Candidatus Sulcia muelleri GWSS
Candidatus Sulcia muelleri SMDSEM
Candidatus Vesicomyosocius okutanii
Canis familiaris (dog)
Capnocytophaga ochracea
Carboxydothermus hydrogenoformans
Catenulispora acidiphila
Caulobacter crescentus CB15
Caulobacter crescentus NA1000
Caulobacter segnis
Caulobacter sp. K31
Cellulomonas flavigena
Cellvibrio japonicus
Chitinophaga pinensis
Chlamydia muridarum
Chlamydia trachomatis 434/Bu
Chlamydia trachomatis A/HAR-13 (serovar A)
Chlamydia trachomatis B/Jali20/OT
Chlamydia trachomatis D/UW-3/CX (serovar D)
Chlamydia trachomatis L2b/UCH-1/proctitis
Chlamydomonas reinhardtii
Chlamydophila abortus
Chlamydophila caviae
Chlamydophila felis
Chlamydophila pneumoniae AR39
Chlamydophila pneumoniae CWL029
Chlamydophila pneumoniae J138
Chlamydophila pneumoniae TW183
Chlorobaculum parvum NCIB 8327
Chlorobaculum tepidum
Chlorobium chlorochromatii
Chlorobium limicola
Chlorobium phaeobacteroides BS1
Chlorobium phaeobacteroides DSM 266
Chlorobium vibrioformis
Chloroflexus aggregans
Chloroflexus aurantiacus
Chloroflexus sp. Y-400-fl
Chloroherpeton thalassium
Chromobacterium violaceum
Chromohalobacter salexigens
Ciona intestinalis (sea squirt)
Citrobacter koseri ATCC BAA-895
Citrobacter rodentium
Clavibacter michiganensis subsp. michiganensis
Clavibacter michiganensis subsp. sepedonicus
Clavispora lusitaniae
Clostridiales genomosp. BVAB3
Clostridium acetobutylicum
Clostridium beijerinckii
Clostridium botulinum A ATCC 19397
Clostridium botulinum A ATCC 3502
Clostridium botulinum A Hall
Clostridium botulinum A2
Clostridium botulinum A3 Loch Maree
Clostridium botulinum B Eklund 17B
Clostridium botulinum B1 Okra
Clostridium botulinum Ba4
Clostridium botulinum E3
Clostridium botulinum F Langeland
Clostridium cellulolyticum
Clostridium difficile 630
Clostridium difficile CD196
Clostridium difficile R20291
Clostridium kluyveri DSM 555
Clostridium kluyveri NBRC 12016
Clostridium novyi
Clostridium perfringens 13
Clostridium perfringens ATCC 13124
Clostridium perfringens SM101
Clostridium phytofermentans
Clostridium tetani E88
Clostridium thermocellum
Coccidioides immitis
Colwellia psychrerythraea
Comamonas testosteroni
Conexibacter woesei
Coprothermobacter proteolyticus
Coraliomargarita akajimensis
Corynebacterium aurimucosum
Corynebacterium diphtheriae
Corynebacterium efficiens
Corynebacterium glutamicum ATCC 13032 (Bielefeld)
Corynebacterium glutamicum ATCC 13032 (Kyowa Hakko)
Corynebacterium glutamicum R
Corynebacterium jeikeium
Corynebacterium kroppenstedtii
Corynebacterium urealyticum
Coxiella burnetii CbuG_Q212
Coxiella burnetii CbuK_Q154
Coxiella burnetii Dugway 5J108-111
Coxiella burnetii RSA 331
Coxiella burnetii RSA 493
Croceibacter atlanticus
Cronobacter turicensis
Cryptobacterium curtum
Cryptococcus neoformans B-3501A
Cryptococcus neoformans JEC21
Cryptosporidium hominis
Cryptosporidium parvum
Culex quinquefasciatus (southern house mosquito)
Cupriavidus taiwanensis
Cyanidioschyzon merolae
Cyanobacteria Yellowstone A-Prime
Cyanobacteria Yellowstone B-Prime
Cyanobacterium UCYN-A
Cyanothece sp. ATCC 51142
Cyanothece sp. PCC 7424
Cyanothece sp. PCC 7425
Cyanothece sp. PCC 8801
Cyanothece sp. PCC 8802
Cytophaga hutchinsonii
Danio rerio (zebrafish)
Debaryomyces hansenii
Dechloromonas aromatica
Deferribacter desulfuricans SSM1
Dehalococcoides ethenogenes
Dehalococcoides sp. BAV1
Dehalococcoides sp. CBDB1
Dehalococcoides sp. GT
Dehalococcoides sp. VS
Dehalogenimonas lykanthroporepellens
Deinococcus deserti
Deinococcus geothermalis
Deinococcus radiodurans
Delftia acidovorans
Denitrovibrio acetiphilus
Desulfatibacillum alkenivorans
Desulfitobacterium hafniense DCB-2
Desulfitobacterium hafniense Y51
Desulfobacterium autotrophicum
Desulfococcus oleovorans
Desulfohalobium retbaense
Desulfomicrobium baculatum
Desulfotalea psychrophila
Desulfotomaculum acetoxidans
Desulfotomaculum reducens
Desulfovibrio desulfuricans ATCC 27774
Desulfovibrio desulfuricans G20
Desulfovibrio magneticus
Desulfovibrio salexigens
Desulfovibrio vulgaris DP4
Desulfovibrio vulgaris Hildenborough
Desulfovibrio vulgaris Miyazaki F
Desulfurivibrio alkaliphilus
Desulfurococcus kamchatkensis
Dichelobacter nodosus
Dickeya dadantii Ech586
Dickeya dadantii Ech703
Dickeya zeae
Dictyoglomus thermophilum
Dictyoglomus turgidum
Dictyostelium discoideum (cellular slime mold)
Dinoroseobacter shibae
Drosophila ananassae
Drosophila erecta
Drosophila grimshawi
Drosophila melanogaster (fruit fly)
Drosophila mojavensis
Drosophila persimilis
Drosophila pseudoobscura pseudoobscura
Drosophila sechellia
Drosophila simulans
Drosophila virilis
Drosophila willistoni
Drosophila yakuba
Dyadobacter fermentans
Edwardsiella ictaluri
Edwardsiella tarda
Eggerthella lenta
Ehrlichia canis
Ehrlichia chaffeensis
Ehrlichia ruminantium Gardel
Ehrlichia ruminantium Welgevonden (France)
Ehrlichia ruminantium Welgevonden (South Africa)
Elusimicrobium minutum
Encephalitozoon cuniculi
Entamoeba dispar
Entamoeba histolytica
Enterobacter cloacae
Enterobacter sakazakii
Enterobacter sp. 638
Enterococcus faecalis
Equus caballus (horse)
Erwinia amylovora ATCC 49946
Erwinia amylovora CFBP1430
Erwinia carotovora
Erwinia pyrifoliae
Erwinia tasmaniensis
Erythrobacter litoralis
Escherichia coli 536 (UPEC)
Escherichia coli 55989 (EAEC)
Escherichia coli ATCC 8739
Escherichia coli B REL606
Escherichia coli BL21
Escherichia coli BL21(DE3)
Escherichia coli ED1a
Escherichia coli IAI1 (commensal)
Escherichia coli K-12 DH10B
Escherichia coli K-12 MC4100(MuLac) BW2952
Escherichia coli K-12 MG1655
Escherichia coli K-12 W3110
Escherichia coli LF82
Escherichia coli O1 (APEC)
Escherichia coli O103:H2 12009
Escherichia coli O111:H- 11128
Escherichia coli O127:H6 (EPEC)
Escherichia coli O139:H28 E24377A (ETEC)
Escherichia coli O152:H28 SE11 (commensal)
Escherichia coli O157:H7 EC4115 (EHEC)
Escherichia coli O157:H7 EDL933 (EHEC)
Escherichia coli O157:H7 Sakai (EHEC)
Escherichia coli O157:H7 TW14359 (EHEC)
Escherichia coli O17:K52:H18 UMN026 (ExPEC)
Escherichia coli O26:H11 11368
Escherichia coli O45:K1 S88 (ExPEC)
Escherichia coli O55:H7 CB9615
Escherichia coli O6:H1 CFT073 (UPEC)
Escherichia coli O7:K1 IAI39 (ExPEC)
Escherichia coli O9 HS (commensal)
Escherichia coli SECEC
Escherichia coli UTI89 (UPEC)
Escherichia fergusonii
Eubacterium eligens
Eubacterium rectale
Exiguobacterium sibiricum
Exiguobacterium sp. AT1b
Ferroglobus placidus
Fervidobacterium nodosum
Fibrobacter succinogenes
Finegoldia magna
Flavobacteriaceae bacterium
Flavobacterium johnsoniae
Flavobacterium psychrophilum
Francisella novicida U112
Francisella philomiragia
Francisella tularensis subsp. holarctica FTNF002-00
Francisella tularensis subsp. holarctica LVS
Francisella tularensis subsp. holarctica OSU18
Francisella tularensis subsp. mediasiatica FSC147
Francisella tularensis subsp. tularensis FSC 198
Francisella tularensis subsp. tularensis SCHU S4
Francisella tularensis subsp. tularensis WY96-3418
Frankia alni
Frankia sp. CcI3
Frankia sp. EAN1pec
Fusarium graminearum
Fusobacterium nucleatum
Gallus gallus (chicken)
Gardnerella vaginalis
Gemmatimonas aurantiaca
Geobacillus kaustophilus
Geobacillus sp. C56-T3
Geobacillus sp. WCH70
Geobacillus sp. Y412MC10
Geobacillus sp. Y412MC61
Geobacillus thermodenitrificans
Geobacter bemidjiensis
Geobacter lovleyi
Geobacter metallireducens
Geobacter sp. FRC-32
Geobacter sp. M21
Geobacter sulfurreducens
Geobacter uraniumreducens
Geodermatophilus obscurus
Giardia lamblia
Gloeobacter violaceus
Gluconacetobacter diazotrophicus PAl 5 (Brazil)
Gluconacetobacter diazotrophicus PAl 5 (JGI)
Gluconobacter oxydans
Gordonia bronchialis
Gramella forsetii
Granulobacter bethesdensis
Haemophilus ducreyi
Haemophilus influenzae 86-028NP (nontypeable)
Haemophilus influenzae PittEE
Haemophilus influenzae PittGG
Haemophilus influenzae Rd KW20 (serotype d)
Haemophilus parasuis
Haemophilus somnus 129PT
Haemophilus somnus 2336
Hahella chejuensis
Haliangium ochraceum
Haloarcula marismortui
Halobacterium salinarum R1
Halobacterium sp. NRC-1
Haloferax volcanii
Halomicrobium mukohataei
Haloquadratum walsbyi
Halorhabdus utahensis
Halorhodospira halophila
Halorubrum lacusprofundi
Haloterrigena turkmenica
Halothermothrix orenii
Halothiobacillus neapolitanus
Helicobacter acinonychis
Helicobacter hepaticus
Helicobacter mustelae
Helicobacter pylori 26695
Helicobacter pylori B38
Helicobacter pylori B8
Helicobacter pylori G27
Helicobacter pylori HPAG1
Helicobacter pylori J99
Helicobacter pylori P12
Helicobacter pylori Shi470
Heliobacterium modesticaldum
Herbaspirillum seropedicae
Herminiimonas arsenicoxydans
Herpetosiphon aurantiacus
Hirschia baltica
Homo sapiens (human)
Hydra magnipapillata
Hydrogenobacter thermophilus
Hydrogenobaculum sp. Y04AAS1
Hyperthermus butylicus
Hyphomicrobium denitrificans
Hyphomonas neptunium
Idiomarina loihiensis
Ignicoccus hospitalis
Ixodes scapularis (black-legged tick)
Jannaschia sp. CCS1
Jonesia denitrificans
Kangiella koreensis
Kineococcus radiotolerans
Klebsiella pneumoniae
Klebsiella pneumoniae 342
Klebsiella pneumoniae NTUH-K2044
Klebsiella variicola
Kluyveromyces lactis
Kocuria rhizophila
Kosmotoga olearia
Kribbella flavida
Kytococcus sedentarius
Laccaria bicolor
Lachancea thermotolerans
Lactobacillus acidophilus
Lactobacillus brevis
Lactobacillus casei ATCC 334
Lactobacillus casei BL23
Lactobacillus crispatus
Lactobacillus delbrueckii ATCC 11842
Lactobacillus delbrueckii ATCC BAA-365
Lactobacillus fermentum
Lactobacillus gasseri
Lactobacillus helveticus
Lactobacillus johnsonii FI9785
Lactobacillus johnsonii NCC 533
Lactobacillus plantarum JDM1
Lactobacillus plantarum WCFS1
Lactobacillus reuteri DSM 20016
Lactobacillus reuteri JCM 1112
Lactobacillus rhamnosus
Lactobacillus rhamnosus Lc 705
Lactobacillus sakei
Lactobacillus salivarius
Lactococcus lactis subsp. cremoris MG1363
Lactococcus lactis subsp. cremoris SK11
Lactococcus lactis subsp. lactis IL1403
Lactococcus lactis subsp. lactis KF147
Laribacter hongkongensis
Lawsonia intracellularis
Legionella longbeachae
Legionella pneumophila 2300/99 Alcoy
Legionella pneumophila Corby
Legionella pneumophila Lens
Legionella pneumophila Paris
Legionella pneumophila Philadelphia 1
Leifsonia xyli xyli CTCB07
Leishmania braziliensis
Leishmania infantum
Leishmania major
Leptospira biflexa serovar Patoc Patoc 1 (Ames)
Leptospira biflexa serovar Patoc Patoc 1 (Paris)
Leptospira borgpetersenii JB197
Leptospira borgpetersenii L550
Leptospira interrogans serovar Copenhageni
Leptospira interrogans serovar lai
Leptothrix cholodnii
Leptotrichia buccalis
Leuconostoc citreum
Leuconostoc gasicomitatum
Leuconostoc kimchii
Leuconostoc mesenteroides
Listeria innocua
Listeria monocytogenes 08-5578
Listeria monocytogenes 08-5923
Listeria monocytogenes 10403S
Listeria monocytogenes Clip81459
Listeria monocytogenes EGD-e
Listeria monocytogenes F2365
Listeria monocytogenes HCC23
Listeria seeligeri
Listeria welshimeri SLCC5334
Lodderomyces elongisporus
Lysinibacillus sphaericus
Macaca mulatta (rhesus monkey)
Macrococcus caseolyticus
Magnaporthe oryzae
Magnetococcus sp. MC-1
Magnetospirillum magneticum
Malassezia globosa
Mannheimia succiniciproducens
Maricaulis maris
Marinobacter aquaeolei
Marinomonas sp. MWYL1
Meiothermus ruber
Meiothermus silvanus
Mesoplasma florum
Mesorhizobium loti
Mesorhizobium sp. BNC1
Metallosphaera sedula
Methanobacterium thermoautotrophicum
Methanobrevibacter ruminantium
Methanobrevibacter smithii ATCC 35061
Methanocaldococcus fervens
Methanocaldococcus infernus
Methanocaldococcus sp. FS406-22
Methanocaldococcus vulcanius
Methanocella paludicola
Methanococcoides burtonii
Methanococcus aeolicus
Methanococcus jannaschii
Methanococcus maripaludis C5
Methanococcus maripaludis C6
Methanococcus maripaludis C7
Methanococcus maripaludis S2
Methanococcus vannielii
Methanococcus voltae
Methanocorpusculum labreanum
Methanoculleus marisnigri
Methanohalobium evestigatum
Methanohalophilus mahii
Methanopyrus kandleri
Methanosaeta thermophila
Methanosarcina acetivorans
Methanosarcina barkeri
Methanosarcina mazei
Methanosphaera stadtmanae
Methanospirillum hungatei
Methylacidiphilum infernorum
Methylibium petroleiphilum
Methylobacillus flagellatus
Methylobacterium chloromethanicum
Methylobacterium extorquens
Methylobacterium extorquens AM1
Methylobacterium extorquens DM4
Methylobacterium nodulans
Methylobacterium populi
Methylobacterium radiotolerans
Methylobacterium sp. 4-46
Methylocella silvestris
Methylococcus capsulatus
Methylosinus trichosporium OB3b
Methylotenera mobilis
Methylotenera sp. 301
Methylovorus sp. SIP3-4
Micrococcus luteus
Microcystis aeruginosa
Minibacterium massiliensis
Mobiluncus curtisii
Moniliophthora perniciosa
Monodelphis domestica (opossum)
Monosiga brevicollis
Moorella thermoacetica
Moraxella catarrhalis
Mus musculus (mouse)
Mycobacterium abscessus ATCC 19977
Mycobacterium avium 104
Mycobacterium avium paratuberculosis
Mycobacterium bovis AF2122/97
Mycobacterium bovis BCG Pasteur 1173P2
Mycobacterium bovis BCG Tokyo 172
Mycobacterium gilvum
Mycobacterium leprae Br4923
Mycobacterium leprae TN
Mycobacterium marinum M
Mycobacterium smegmatis
Mycobacterium sp. JLS
Mycobacterium sp. KMS
Mycobacterium sp. MCS
Mycobacterium tuberculosis CDC1551
Mycobacterium tuberculosis F11
Mycobacterium tuberculosis H37Ra
Mycobacterium tuberculosis H37Rv
Mycobacterium tuberculosis KZN 1435
Mycobacterium ulcerans
Mycobacterium vanbaalenii
Mycoplasma agalactiae 5632
Mycoplasma agalactiae PG2
Mycoplasma arthritidis
Mycoplasma capricolum
Mycoplasma conjunctivae
Mycoplasma crocodyli
Mycoplasma gallisepticum
Mycoplasma genitalium
Mycoplasma hominis
Mycoplasma hyopneumoniae 232
Mycoplasma hyopneumoniae 7448
Mycoplasma hyopneumoniae J
Mycoplasma mobile
Mycoplasma mycoides
Mycoplasma penetrans
Mycoplasma pneumoniae
Mycoplasma pulmonis
Mycoplasma synoviae
Myxococcus xanthus
Naegleria gruberi
Nakamurella multipartita
Nanoarchaeum equitans
Nasonia vitripennis (jewel wasp)
Natranaerobius thermophilus
Natrialba magadii
Natronomonas pharaonis
Nautilia profundicola
Neisseria gonorrhoeae FA 1090
Neisseria gonorrhoeae NCCP11945
Neisseria meningitidis 053442 (serogroup C)
Neisseria meningitidis FAM18 (serogroup C)
Neisseria meningitidis MC58 (serogroup B)
Neisseria meningitidis Z2491 (serogroup A)
Neisseria meningitidis alpha14
Nematostella vectensis (sea anemone)
Neorickettsia risticii
Neorickettsia sennetsu
Neosartorya fischeri
Neurospora crassa
Nitratiruptor sp. SB155-2
Nitrobacter hamburgensis
Nitrobacter winogradskyi
Nitrosococcus halophilus
Nitrosococcus oceani
Nitrosococcus watsoni
Nitrosomonas europaea
Nitrosomonas eutropha
Nitrosopumilus maritimus
Nitrosospira multiformis
Nocardia farcinica
Nocardioides sp. JS614
Nocardiopsis dassonvillei
Nostoc azollae' 0708
Nostoc punctiforme
Novosphingobium aromaticivorans
Oceanobacillus iheyensis
Ochrobactrum anthropi
Oenococcus oeni
Oligotropha carboxidovorans
Opitutus terrae
Orientia tsutsugamushi Boryong
Orientia tsutsugamushi Ikeda
Ornithorhynchus anatinus (platypus)
Oryza sativa japonica (Japanese rice)
Ostreococcus lucimarinus
Paenibacillus sp. JDR-2
Pan troglodytes (chimpanzee)
Pantoea ananatis
Parabacteroides distasonis
Paracoccus denitrificans
Paramecium tetraurelia
Parvibaculum lavamentivorans
Pasteurella multocida
Pectobacterium carotovorum
Pectobacterium wasabiae
Pediculus humanus corporis (human body louse)
Pediococcus pentosaceus
Pedobacter heparinus
Pelobacter carbinolicus
Pelobacter propionicus
Pelodictyon luteolum
Pelodictyon phaeoclathratiforme
Pelotomaculum thermopropionicum
Penicillium chrysogenum
Persephonella marina
Petrotoga mobilis
Phaeodactylum tricornutum
Phaeosphaeria nodorum
Phenylobacterium zucineum
Photobacterium profundum
Photorhabdus asymbiotica
Photorhabdus luminescens
Physcomitrella patens subsp. patens
Phytoplasma AYWB
Phytoplasma OY
Pichia guilliermondii
Pichia pastoris
Pichia stipitis
Picrophilus torridus
Pirellula staleyi
Planctomyces limnophilus
Plasmodium berghei
Plasmodium chabaudi
Plasmodium falciparum 3D7
Plasmodium falciparum Dd2
Plasmodium falciparum HB3
Plasmodium knowlesi
Plasmodium vivax
Plasmodium yoelii
Podospora anserina
Polaromonas naphthalenivorans
Polaromonas sp. JS666
Polynucleobacter necessarius
Polynucleobacter sp. QLW-P1DMWA-1
Populus trichocarpa (black cottonwood)
Porphyromonas gingivalis ATCC 33277
Porphyromonas gingivalis W83
Postia placenta
Prevotella ruminicola
Prochlorococcus marinus AS9601
Prochlorococcus marinus MED4
Prochlorococcus marinus MIT 9211
Prochlorococcus marinus MIT 9215
Prochlorococcus marinus MIT 9301
Prochlorococcus marinus MIT 9303
Prochlorococcus marinus MIT 9313
Prochlorococcus marinus MIT 9515
Prochlorococcus marinus MIT9312
Prochlorococcus marinus NATL1A
Prochlorococcus marinus NATL2A
Prochlorococcus marinus SS120
Propionibacterium acnes KPA171202
Propionibacterium acnes SK137
Propionibacterium freudenreichii
Prosthecochloris aestuarii
Proteus mirabilis
Pseudoalteromonas atlantica
Pseudoalteromonas haloplanktis
Pseudomonas aeruginosa LESB58
Pseudomonas aeruginosa PA7
Pseudomonas aeruginosa PAO1
Pseudomonas aeruginosa UCBPP-PA14
Pseudomonas entomophila
Pseudomonas fluorescens Pf-5
Pseudomonas fluorescens Pf0-1
Pseudomonas fluorescens SBW25
Pseudomonas mendocina
Pseudomonas putida F1
Pseudomonas putida GB-1
Pseudomonas putida KT2440
Pseudomonas putida W619
Pseudomonas stutzeri
Pseudomonas syringae pv. phaseolicola 1448A
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. tomato DC3000
Psychrobacter arcticum
Psychrobacter cryohalolentis
Psychrobacter sp. PRwf-1
Psychromonas ingrahamii
Pyrobaculum aerophilum
Pyrobaculum arsenaticum
Pyrobaculum calidifontis
Pyrobaculum islandicum
Pyrococcus abyssi
Pyrococcus furiosus
Pyrococcus horikoshii
Ralstonia eutropha H16
Ralstonia eutropha JMP134
Ralstonia metallidurans
Ralstonia pickettii 12D
Ralstonia pickettii 12J
Ralstonia solanacearum
Rattus norvegicus (rat)
Renibacterium salmoninarum
Rhizobium etli CFN 42
Rhizobium etli CIAT 652
Rhizobium leguminosarum
Rhizobium leguminosarum bv. trifolii WSM1325
Rhizobium leguminosarum bv. trifolii WSM2304
Rhizobium sp. NGR234
Rhodobacter capsulatus
Rhodobacter sphaeroides 2.4.1
Rhodobacter sphaeroides ATCC 17025
Rhodobacter sphaeroides ATCC 17029
Rhodobacter sphaeroides KD131
Rhodococcus erythropolis
Rhodococcus opacus
Rhodococcus sp. RHA1
Rhodoferax ferrireducens
Rhodopirellula baltica
Rhodopseudomonas palustris BisA53
Rhodopseudomonas palustris BisB18
Rhodopseudomonas palustris BisB5
Rhodopseudomonas palustris CGA009
Rhodopseudomonas palustris HaA2
Rhodopseudomonas palustris TIE-1
Rhodospirillum centenum
Rhodospirillum rubrum
Rhodothermus marinus
Ricinus communis (castor bean)
Rickettsia africae
Rickettsia akari
Rickettsia bellii OSU 85-389
Rickettsia bellii RML369-C
Rickettsia canadensis
Rickettsia conorii
Rickettsia felis
Rickettsia massiliae
Rickettsia peacockii
Rickettsia prowazekii
Rickettsia rickettsii Iowa
Rickettsia rickettsii Sheila Smith
Rickettsia typhi
Robiginitalea biformata
Roseiflexus castenholzii DSM13941
Roseiflexus sp. RS-1
Roseobacter denitrificans
Rothia mucilaginosa
Rubrobacter xylanophilus
Saccharomonospora viridis
Saccharomyces cerevisiae (budding yeast)
Saccharophagus degradans
Saccharopolyspora erythraea
Salinibacter ruber
Salinibacter ruber
Salinispora arenicola
Salinispora tropica
Salmonella enterica subsp. arizonae
Salmonella enterica subsp. enterica serovar Agona
Salmonella enterica subsp. enterica serovar Choleraesuis
Salmonella enterica subsp. enterica serovar Dublin
Salmonella enterica subsp. enterica serovar Enteritidis
Salmonella enterica subsp. enterica serovar Gallinarum
Salmonella enterica subsp. enterica serovar Heidelberg
Salmonella enterica subsp. enterica serovar Newport
Salmonella enterica subsp. enterica serovar Paratyphi A AKU12601
Salmonella enterica subsp. enterica serovar Paratyphi A ATCC9150
Salmonella enterica subsp. enterica serovar Paratyphi B
Salmonella enterica subsp. enterica serovar Paratyphi C
Salmonella enterica subsp. enterica serovar Schwarzengrund
Salmonella enterica subsp. enterica serovar Typhi CT18
Salmonella enterica subsp. enterica serovar Typhi Ty2
Salmonella enterica subsp. enterica serovar Typhimurium LT2
Sanguibacter keddieii
Schistosoma mansoni
Schizosaccharomyces pombe (fission yeast)
Sclerotinia sclerotiorum
Sebaldella termitidis
Segniliparus rotundus
Serratia proteamaculans
Shewanella amazonensis
Shewanella baltica OS155
Shewanella baltica OS185
Shewanella baltica OS195
Shewanella baltica OS223
Shewanella denitrificans
Shewanella frigidimarina
Shewanella halifaxensis
Shewanella loihica
Shewanella oneidensis
Shewanella pealeana
Shewanella piezotolerans WP3
Shewanella putrefaciens
Shewanella sediminis
Shewanella sp. ANA-3
Shewanella sp. MR-4
Shewanella sp. MR-7
Shewanella sp. W3-18-1
Shewanella violacea
Shewanella woodyi ATCC 51908
Shigella boydii CDC 3083-94
Shigella boydii Sb227
Shigella dysenteriae
Shigella flexneri 2457T (serotype 2a)
Shigella flexneri 301 (serotype 2a)
Shigella flexneri 8401 (serotype 5b)
Shigella sonnei
Sideroxydans lithotrophicus
Silicibacter pomeroyi
Silicibacter sp. TM1040
Sinorhizobium medicae
Sinorhizobium meliloti
Slackia heliotrinireducens
Sodalis glossinidius
Solibacter usitatus
Sorangium cellulosum
Sorghum bicolor (sorghum)
Sphaerobacter thermophilus
Sphingobium japonicum
Sphingomonas wittichii
Sphingopyxis alaskensis
Spirosoma linguale
Stackebrandtia nassauensis
Staphylococcus aureus COL (MRSA)
Staphylococcus aureus ED98
Staphylococcus aureus JH1 (MRSA/VSSA)
Staphylococcus aureus JH9 (MRSA/VRSA)
Staphylococcus aureus MRSA252 (MRSA)
Staphylococcus aureus MSSA476 (MSSA)
Staphylococcus aureus MW2 (CA-MRSA)
Staphylococcus aureus Mu3 (MRSA/hetero-VISA)
Staphylococcus aureus Mu50 (MRSA/VISA)
Staphylococcus aureus N315 (MRSA/VSSA)
Staphylococcus aureus NCTC8325
Staphylococcus aureus Newman
Staphylococcus aureus RF122
Staphylococcus aureus USA300_FPR3757 (CA-MRSA)
Staphylococcus aureus USA300_TCH1516 (CA-MSSA)
Staphylococcus carnosus
Staphylococcus epidermidis ATCC 12228
Staphylococcus epidermidis RP62A
Staphylococcus haemolyticus
Staphylococcus lugdunensis
Staphylococcus saprophyticus
Staphylothermus hellenicus
Staphylothermus marinus
Starkeya novella
Stenotrophomonas maltophilia K279a
Stenotrophomonas maltophilia R551-3
Streptobacillus moniliformis
Streptococcus agalactiae 2603 (serotype V)
Streptococcus agalactiae A909 (serotype Ia)
Streptococcus agalactiae NEM316 (serotype III)
Streptococcus dysgalactiae
Streptococcus equi subsp. equi 4047
Streptococcus equi subsp. zooepidemicus H70
Streptococcus equi subsp. zooepidemicus MGCS10565
Streptococcus gallolyticus
Streptococcus gordonii
Streptococcus mitis B6
Streptococcus mutans NN2025
Streptococcus mutans UA159
Streptococcus pneumoniae 70585
Streptococcus pneumoniae ATCC 700669 (serotype 23F ST81 lineage)
Streptococcus pneumoniae CGSP14 (serotype 14)
Streptococcus pneumoniae D39 (virulent serotype 2)
Streptococcus pneumoniae G54 (serotype 19F)
Streptococcus pneumoniae Hungary19A 6
Streptococcus pneumoniae JJA
Streptococcus pneumoniae P1031
Streptococcus pneumoniae R6 (avirulent)
Streptococcus pneumoniae TCH8431/19A
Streptococcus pneumoniae TIGR4 (virulent serotype 4)
Streptococcus pneumoniae Taiwan19F-14
Streptococcus pyogenes MGAS10270 (serotype M2)
Streptococcus pyogenes MGAS10394 (serotype M6)
Streptococcus pyogenes MGAS10750 (serotype M4)
Streptococcus pyogenes MGAS2096 (serotype M12)
Streptococcus pyogenes MGAS315 (serotype M3)
Streptococcus pyogenes MGAS5005 (serotype M1)
Streptococcus pyogenes MGAS6180 (serotype M28)
Streptococcus pyogenes MGAS8232 (serotype M18)
Streptococcus pyogenes MGAS9429 (serotype M12)
Streptococcus pyogenes Manfredo (serotype M5)
Streptococcus pyogenes NZ131 (serotype M49)
Streptococcus pyogenes SF370 (serotype M1)
Streptococcus pyogenes SSI-1 (serotype M3)
Streptococcus sanguinis
Streptococcus suis 05ZYH33
Streptococcus suis 98HAH33
Streptococcus suis BM407
Streptococcus suis P1/7
Streptococcus suis SC84
Streptococcus thermophilus CNRZ1066
Streptococcus thermophilus LMD-9
Streptococcus thermophilus LMG18311
Streptococcus uberis
Streptomyces avermitilis
Streptomyces coelicolor
Streptomyces griseus
Streptomyces scabiei
Streptosporangium roseum
Strongylocentrotus purpuratus (purple sea urchin)
Sulfolobus acidocaldarius
Sulfolobus islandicus L.D.8.5
Sulfolobus islandicus L.S.2.15
Sulfolobus islandicus M.14.25
Sulfolobus islandicus M.16.27
Sulfolobus islandicus M.16.4
Sulfolobus islandicus Y.G.57.14
Sulfolobus islandicus Y.N.15.51
Sulfolobus solfataricus
Sulfolobus tokodaii
Sulfurihydrogenibium azorense
Sulfurihydrogenibium sp. YO3AOP1
Sulfurimonas denitrificans
Sulfurospirillum deleyianum
Sulfurovum sp. NBC37-1
Sus scrofa (pig)
Symbiobacterium thermophilum
Synechococcus elongatus PCC6301
Synechococcus elongatus PCC7942
Synechococcus sp. CC9311
Synechococcus sp. CC9605
Synechococcus sp. CC9902
Synechococcus sp. PCC7002
Synechococcus sp. RCC307
Synechococcus sp. WH7803
Synechococcus sp. WH8102
Synechocystis sp. PCC6803
Syntrophobacter fumaroxidans
Syntrophomonas wolfei
Syntrophothermus lipocalidus
Syntrophus aciditrophicus
Taeniopygia guttata (zebra finch)
Teredinibacter turnerae
Tetrahymena thermophila
Thalassiosira pseudonana
Thauera sp. MZ1T
Theileria annulata
Theileria parva
Thermanaerovibrio acidaminovorans
Thermincola sp. JR
Thermoanaerobacter italicus
Thermoanaerobacter mathranii
Thermoanaerobacter pseudethanolicus
Thermoanaerobacter sp. X514
Thermoanaerobacter tengcongensis
Thermobaculum terrenum
Thermobifida fusca
Thermobispora bispora
Thermococcus gammatolerans
Thermococcus kodakaraensis
Thermococcus onnurineus
Thermococcus sibiricus
Thermocrinis albus
Thermodesulfovibrio yellowstonii
Thermofilum pendens
Thermomicrobium roseum
Thermomonospora curvata
Thermoplasma acidophilum
Thermoplasma volcanium
Thermoproteus neutrophilus
Thermosipho africanus
Thermosipho melanesiensis
Thermosphaera aggregans
Thermosynechococcus elongatus
Thermotoga lettingae
Thermotoga maritima
Thermotoga naphthophila
Thermotoga neapolitana
Thermotoga petrophila
Thermotoga sp. RQ2
Thermus thermophilus HB27
Thermus thermophilus HB8
Thioalkalivibrio sp. HL-EbGR7
Thioalkalivibrio sp. K90mix
Thiobacillus denitrificans
Thiomicrospira crunogena
Thiomonas intermedia
Tolumonas auensis
Toxoplasma gondii
Treponema denticola
Treponema pallidum subsp. pallidum Nichols
Treponema pallidum subsp. pallidum SS14
Tribolium castaneum (red flour beetle)
Trichodesmium erythraeum
Trichomonas vaginalis
Trichoplax adhaerens
Tropheryma whipplei TW08/27
Tropheryma whipplei Twist
Truepera radiovictrix
Trypanosoma brucei
Trypanosoma cruzi
Tsukamurella paurometabola
Uncinocarpus reesii
Uncultured Termite group 1 bacterium phylotype Rs-D17
Uncultured methanogenic archaeon RC-I
Ureaplasma parvum serovar 3 ATCC 27815
Ureaplasma parvum serovar 3 ATCC 700970
Ureaplasma urealyticum serovar 10 ATCC 33699
Ustilago maydis
Vanderwaltozyma polyspora
Variovorax paradoxus
Veillonella parvula
Verminephrobacter eiseniae
Vibrio cholerae M66-2
Vibrio cholerae MJ-1236
Vibrio cholerae O1
Vibrio cholerae O395
Vibrio fischeri
Vibrio fischeri MJ11
Vibrio harveyi
Vibrio parahaemolyticus
Vibrio sp. Ex25
Vibrio splendidus
Vibrio vulnificus CMCP6
Vibrio vulnificus YJ016
Vitis vinifera (wine grape)
Waddlia chondrophila
Wigglesworthia glossinidia
Wolbachia pipientis
Wolbachia sp. wRi
Wolbachia wBm
Wolbachia wMel
Wolinella succinogenes
Xanthobacter autotrophicus
Xanthomonas albilineans
Xanthomonas axonopodis
Xanthomonas campestris pv. campestris 8004
Xanthomonas campestris pv. campestris ATCC 33913
Xanthomonas campestris pv. campestris B100
Xanthomonas campestris pv. vesicatoria
Xanthomonas oryzae KACC10331
Xanthomonas oryzae MAFF311018
Xanthomonas oryzae PXO99A
Xenopus laevis (African clawed frog)
Xenopus tropicalis (western clawed frog)
Xenorhabdus bovienii
Xylanimonas cellulosilytica
Xylella fastidiosa 9a5c
Xylella fastidiosa M12
Xylella fastidiosa M23
Xylella fastidiosa Temecula1
Yarrowia lipolytica
Yersinia enterocolitica
Yersinia pestis Angola (biovar Antiqua)
Yersinia pestis Antiqua (biovar Antiqua)
Yersinia pestis CO92 (biovar Orientalis)
Yersinia pestis KIM (biovar Mediaevalis)
Yersinia pestis Mediaevails (biovar Mediaevalis)
Yersinia pestis Nepal516 (biovar Antiqua)
Yersinia pestis Pestoides (biovar Microtus)
Yersinia pestis Z176003
Yersinia pseudotuberculosis IP31758
Yersinia pseudotuberculosis IP32953
Yersinia pseudotuberculosis PB1/+
Yersinia pseudotuberculosis YPIII
Zea mays (maize)
Zunongwangia profunda
Zygosaccharomyces rouxii
Zymomonas mobilis
Zymomonas mobilis subsp. mobilis NCIMB 11163
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