HHpred
- Results
Job-ID: 4715413 Date: 19:52 on Dec 14 2016
Note: Corrupted alignments are the most common source of high-scoring false positives. Check the query alignment by clicking Show Query Alignment above. To check the template alignments use the
Query Wed_Dec_14_19:52:44_+0100_2016 (seq=MPLHVKWPFP...QLHNHLQPGR Len=292 Neff=8.4 Nseqs=134)
Parameters score SS:yes search:local realign with MAP:no
1 1iuq_A Glycerol-3-phosphate ac 99.8 7.3E-21 1.9E-25 176.4 12.1 211 27-289 94-352 (367)
2 5f2t_A Phosphatidylinositol ma 99.7 1.8E-15 4.7E-20 136.4 16.2 192 16-276 72-274 (308)
3 5knk_B Lipid A biosynthesis la 99.6 1.5E-14 4E-19 132.0 19.8 197 9-276 62-278 (333)
4 3twe_A Alpha4H; unknown functi 30.6 79 0.002 16.7 3.0 25 267-291 3-27 (27)
5 5b16_B Microprocessor complex 29.0 74 0.0019 18.6 2.9 27 265-291 5-31 (39)
No 1 1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita
moschata} SCOP: c.112.1.1 l.1.1.1 PDB: 1k30 _A
Probab=99.84 E-value=7.3e-21 Score=176.35 Aligned_cols=211 Identities=16% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhh ---------cCEEe chHHHHHHHHh cCCCCCEEEEe CCCccCchHHHHHHhhh ------ccccChh
Q Wed_Dec_14_19: 27 LV G T Y S C FW T K Y M N --------- H L T V H N R E VL Y E LI E KR G P AT P LI T V S N H Q S C M DD P H L W G IL K L ------ R H I W N L K 91 (292)
Q Consensus 27 ~~~~~~~~~~~~~~---------~ i~ v~ g~ e~ l~~~~~~~~~~~~~ I~ v~ NH~ s~~ D~~~ l~~~~~~------~~~~~~~ 91 (292)
+..+...++..... ++++.|.|++| .++|+|+++||+|++|++++...+.. +...+
T Consensus 94 ~~~~~~~~~~~ l~~~~~~~~~ g~~ v~ v~ g~ e~ lp-------~~~ p~ IivsNH~ S~ lD~~~ l~~~ l~~~~~~~~~~~~ f-- 164 (367)
T 1iuq_A 94 YY I F G QN Y I R P LI D F G N S F V G N L S L F K D I EE K L Q ------- Q G H N VVLI S N H Q T E A D P A II S LLL E K T N P Y I A E N T I F -- 164 (367)
T ss_dssp HHHHHHHHH GGGBCGGGCEEE CHHHHHHHHHHHH -------TTCEEEEEE CCCCTTHHHHHHHHH TTTCHHHHHH CEE --
T ss_pred HHHHHHHHHHHHHhhhh ceE cceEEEEe hhhh cC-------CCCcEEEEE CCCCcchHHHHHHHHHHh CcchhhhhHH --
Q ss_pred h cCcchhHHHHH cCChH ---HHHHHHh CCeEEEe CC----------chh ccccccCccccccCCcCCCCCcccccCCccc
Q Wed_Dec_14_19: 92 LM R W T P AAA D I C F T K E L --- H S H FF S L G K C V P V C R G ---------- A E FF Q A E N E G K G VL D T G R H M P G A G KRR E K G D G V Y 158 (292)
Q Consensus 92 ~~~~~~~~~~~~~~~~~---~~~~~~~~ g~ ipv~ r~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (292)
++++.++..|+ +++.+... +++++|. +. ...
T Consensus 165 ------ vak~~ l~~~ P~~~~~~~~~~~~-~ i~ v~ R~~ g~~ p~~~ r~~~-----------------------------~~~ 208 (367)
T 1iuq_A 165 ------ V A G D R VL A D P L C K P F S I G R N LI - C V Y S KK H M F D I P E L T E T KR ----------------------------- K A N 208 (367)
T ss_dssp ------EE CTHHHH CTTTHHHHH TSEEE -E CCCGGGTTSSGGGHHHHH -----------------------------HHH
T ss_pred ------hhhhHhhh ChHHHHHHHh cCce -EEEEe cccCCchhhhhhhH -----------------------------HHH
Q ss_pred hHHHHHHHHHHh -CCCeEEEee Ccee cCC----C--ccccccchHH ----HHHHh cCCCCE --EEEEEee chh ccCCCCC
Q Wed_Dec_14_19: 159 Q K G M D F IL E K L N - H G D W V H I F P E G K V N M S ---- S -- E F L R F K W G I G ---- R LI A E C H L N P I -- IL P L W H V G M N D VL P N S P 225 (292)
Q Consensus 159 ~~~~~~~~~~ l~-~ g~~ v~ IfPEG~~~~~----~--~~~~~ k~ G~~----~ la~~~~~~~~-- IvPv~ i~ g~~~~~~~~~ 225 (292)
..+++.+.+.|+ +|.+|+|||||+++.+ + .+.+|++|++ ++|.++ ++| |+||++. ....++...
T Consensus 209 ~~~ l~~~~~~ L~~~ G~~ v~ IFPEGtrs~~~~~~~~~~ l~~ fk~ G~~~~~~~ lA~~~--~~ p~~ IvPV~ i~-~~~~~ p~~~ 285 (367)
T 1iuq_A 209 T R S L K E M A LLL R GG S Q LI W I A P S GG R D R P D P ST G E WY P A P F D ASS V D N M RR LI Q H S -- D V P G H L F P L A LL - C H D IM PPP S 285 (367)
T ss_dssp HHHHHHHHHHHHH CCCEEEE CTTCSCCCBCTTTCCBCCCCCCHHHHHHHHHHHH TS--SSCEEEEEEEEE -CGGGSCCC-
T ss_pred HHHHHHHHHHHHh CCeEEEEe CCCCcCCCCccCCccccCCCCchHHHHHHHHHHh c--CCCcEEEEEEEe -eee cCCCcc
Q ss_pred -------CCCCCCCCeEEEEE CCCcccHHHHHHHHHh CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh cC
Q Wed_Dec_14_19: 226 ------- P YF P R F G Q K I T VLI G K P F SA L P VL E R L R A E N K SA V E M RK A L T D F I Q EE F Q H L K T Q A E Q L H N H L Q 289 (292)
Q Consensus 226 -------~~~~~~~~~ v~ i~~ g~ pi~~~~~~~~~~~~~~~~~~~~~~~~~~ i~~~ l~~ l~~~~~~~~~~~~ 289 (292)
......+.+++|+||+||..+++.. ...+..+..+++++.+++.+.++..+..+.....+
T Consensus 286 ~~~~~~~~~~~~~~~~ v~ v~~ g~ PI~~~~~~~----~~~~~~~~~~~ l~~~ v~~~ i~~~ l~~~~~~~~~~~ 352 (367)
T 1iuq_A 286 Q V E I E I G E KR VI A F N G A G L S V A P E I S F EE I AA ---- T H K N P EE V R E A Y S K A L F D S V A M Q Y N VL K TA I S G K Q 352 (367)
T ss_dssp ---------CCCCCBCCEEEE CCCCCHHHHHH ----TSSSHHHHHHHHHHHHHHHHHHHHHHHHHH TTTCC
T ss_pred hHHHhh chhh ccCCceEEEEE CCCccHHHhhh ----h ccCcHHHHHHHHHHHHHHHHHHHHHHHHHh cCcc
No 2 5f2t_A Phosphatidylinositol mannoside acyltransferase; glycolipid biosynthesis; HET: PLM; 2.06A {Mycobacterium
smegmatis} PDB: 5f2z _A* 5f31 _A* 5f34 _A*
Probab=99.67 E-value=1.8e-15 Score=136.38 Aligned_cols=192 Identities=11% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh cCEEe chHHHHHHHHh cCCCCCEEEEe CCCccCchHHHHHHhhh ccccChhh cCc
Q Wed_Dec_14_19: 16 T W T L ASS VVM G LV G T Y S C FW T K Y M N H L T V H N R E VL Y E LI E KR G P AT P LI T V S N H Q S C M DD P H L W G IL K L R H I W N L K LM R W 95 (292)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~ i~ v~ g~ e~ l~~~~~~~~~~~~~ I~ v~ NH~ s~~ D~~~ l~~~~~~~~~~~~~~~~~ 95 (292)
.++......+..+.....--.....+++++|.|++++.+++ ++|+|+++||.+.+|.+.+...........
T Consensus 72 ~~~~~~~~~~ e~~~~~~~~~~~~~~~~~ v~ g~ e~ l~~~~~~---~~~~ Ilv~~ H~ g~~ d~~~~~~~~~~~~~~~------ 142 (308)
T 5f2t_A 72 S L AS Y A R YW R E A F R L P A M D H G R L G E Q L D VI D I D H L W SA L D A --- G R G A VL A L P H S G N W D M A G V W LV QN Y G P F TT ------ 142 (308)
T ss_dssp HHHHHHHHHHHHHH GGGSCHHHHHHH CCCBTTHHHHHHHH T---TCCEEEEE CSBSCHHHHHHHHHHH TCCCEE ------
T ss_pred HHHHHHHHHHHHH ccCcCChHHHhhH eee cCHHHHHHHHh c---CCCEEEEe cCcchHHHHHHHHHh cCCCeEE ------
Q ss_pred chhHH ----HHH cCChHHHHHHHh CCeEEEe CCchh ccccccCccccccCCcCCCCCcccccCCccchHHHHHHHHHHh C
Q Wed_Dec_14_19: 96 T P AAA ---- D I C F T K E L H S H FF S L G K C V P V C R G A E FF Q A E N E G K G VL D T G R H M P G A G KRR E K G D G V Y Q K G M D F IL E K L N H 171 (292)
Q Consensus 96 ~~~~~----~~~~~~~~~~~~~~~~ g~ ipv~ r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ l~~ 171 (292)
++. ..++.. +..+++..|+++|++++. ....++.+.+.+++
T Consensus 143 -- v~~~~~ n~~~~~~--~~~~~~~~ g~~~ i~~~~~-------------------------------~~~~~~~~~~~ L~~ 187 (308)
T 5f2t_A 143 -- V A E R L K P E S L Y RR -- F V E Y R E S L G F E VL P L T GG ------------------------------- E R PP F E VL A E R L T D 187 (308)
T ss_dssp --EE CCCSSHHHHHH --HHHHHHH TTCEEEE SSSS-------------------------------SSCHHHHHHHHHH T
T ss_pred --EEe cCCCHHHHHH --HHHHHHH CCCEEEe cCCC-------------------------------cchHHHHHHHHHh c
Q ss_pred CCeEEEee Ccee cCC-------CccccccchHHHHHHh cCCCCEEEEEEee chh ccCCCCCCCCCCCCCeEEEEE CCCcc
Q Wed_Dec_14_19: 172 G D W V H I F P E G K V N M S ------- S E F L R F K W G I G R LI A E C H L N P IIL P L W H V G M N D VL P N S PP YF P R F G Q K I T VLI G K P F S 244 (292)
Q Consensus 172 g~~ v~ IfPEG~~~~~-------~~~~~~ k~ G~~~ la~~~~~~~~ IvPv~ i~ g~~~~~~~~~~~~~~~~~~ v~ i~~ g~ pi~ 244 (292)
|..++|||||++..+ |...+++.|+++||.++ ++||+|+++.+. ...+.+.+++|+.
T Consensus 188 g~~ v~ i~ pdg~~~~~~~~ v~ F~ g~~~~~~~ G~~~ lA~~~--~~ pVvpv~~~~~--------------~~~~~ i~~~~ pi~ 251 (308)
T 5f2t_A 188 N R P I C LM A E R D L T R S G V Q V D FF G E AT R M P A G P A K L A I E T -- G AA L F P V H C WF E -------------- G D G W G M R V Y P E L D 251 (308)
T ss_dssp TCEEEEE CSCCCSTTSEEEEE TTEEEEE CSHHHHHHHHH --CCEEEEEEEEEE --------------TTEEEEEE CCCCC
T ss_pred CCEEEEEe ccCCCCCceEEe cCCcee cccchHHHHHHHh --CCcEEEEEEEEe --------------CCcEEEEEe cCCC
Q ss_pred cHHHHHHHHHh CccHHHHHHHHHHHHHHHHHH
Q Wed_Dec_14_19: 245 A L P VL E R L R A E N K SA V E M RK A L T D F I Q EE F Q H 276 (292)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~ i~~~ l~~ 276 (292)
.++. +..+.++++.+.+++.+.+
T Consensus 252 ~~~~---------~~~~~~~~~~~~ le~~ i~~ 274 (308)
T 5f2t_A 252 TSS G --------- D V TA I T Q A L A D R F AA N I AT 274 (308)
T ss_dssp CTTC---------CHHHHHHHHHHHHHHHHHH
T ss_pred Ccch ---------hHHHHHHHHHHHHHHHHHh
No 3 5knk_B Lipid A biosynthesis lauroyl acyltransferase; LPXM MSBB WAAN, lauryl transferase; HET: LMT 11A; 1.90A
{Acinetobacter baumannii niph 410} PDB: 5kn7 _B*
Probab=99.64 E-value=1.5e-14 Score=132.01 Aligned_cols=197 Identities=12% Similarity=0.087 Sum_probs=0.0
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHhh c---------CEEe chHHHHHHHHh cCCCCCEEEEe CCCccCchHHHH
Q Wed_Dec_14_19: 9 F P A V PP L T W T L ASS VVM G LV G T Y S C FW T K Y M N H --------- L T V H N R E VL Y E LI E KR G P AT P LI T V S N H Q S C M DD P H L W 79 (292)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- i~ v~ g~ e~ l~~~~~~~~~~~~~ I~ v~ NH~ s~~ D~~~ l~ 79 (292)
+|+.+..--+.+..-.+.-++....-....+.. ++++|.|++++.+++ ++|+|+++||.+.+|.+.+.
T Consensus 62 ~ p~~ s~~ e~~~ l~~~~~~~~~~~~~ e~~~~~~~~~~~ l~~~~ v~ v~ g~ e~ l~~~~~~---~~~~ Ilv~~ H~ g~~ D~~~~~ 138 (333)
T 5knk_B 62 L P Y L T P QQ R I A I T E K A V R N E L TS YF E F L S I W G SS N S K N I S R I H R I E G E H FF H E A L AA --- KK G VVLIV P H F G T W A VM N A W 138 (333)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH TSCHHHHHH TEEEEE CHHHHHHHHH T---TSCEEEE CCSBTTGGGHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh cCCHHhhhh ceEEe cCHHHHHHHHH c---CCCEEEEe ccchHHHHHHHH
Q ss_pred HHhhh ccccChhh cCcchhHHHHH cCChHHHHHHHh C----CeEEEe CCchh ccccccCccccccCCcCCCCCcccccCC
Q Wed_Dec_14_19: 80 G IL K L R H I W N L K LM R W T P AAA D I C F T K E L H S H FF S L G ---- K C V P V C R G A E FF Q A E N E G K G VL D T G R H M P G A G KRR E K G D 155 (292)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- g~ ipv~ r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (292)
.... ..... ++... +.++++.++... |+++|++
T Consensus 139 ~~~~-~~~~~-------- v~~~~--~~~~~~~~~~~~ r~~~ g~~~ i~~-------------------------------- 175 (333)
T 5knk_B 139 C A Q F - TS M T I -------- L Y K P V -- K N A D A D R F V R E A R S R E Q A N LV P T -------------------------------- 175 (333)
T ss_dssp HH TT-SCEEE --------EE CCC--SSHHHHHHHHHHHHH TTCEEEE S--------------------------------
T ss_pred HHh c-CceEE --------EEe CC--CCHHHHHHHHHHHHh cCCEEEe c--------------------------------
Q ss_pred ccchHHHHHHHHHHh CCCeEEEee Ccee cCC-------CccccccchHHHHHHh cCCCCEEEEEEee chh ccCCCCCCCC
Q Wed_Dec_14_19: 156 G V Y Q K G M D F IL E K L N H G D W V H I F P E G K V N M S ------- S E F L R F K W G I G R LI A E C H L N P IIL P L W H V G M N D VL P N S PP YF 228 (292)
Q Consensus 156 ~~~~~~~~~~~~~ l~~ g~~ v~ IfPEG~~~~~-------~~~~~~ k~ G~~~ la~~~~~~~~ IvPv~ i~ g~~~~~~~~~~~~ 228 (292)
....++.+.+.+++|..++|||||++..+ |...+++.|+++||.++ ++||+|+++.+...
T Consensus 176 --~~~~~~~~~~~ L~~ g~~ v~ i~ pDg~~~~~~~~ v~ F~ g~~~~~~~ G~~~ LA~~~--~~ pVvpv~~~~~~~--------- 242 (333)
T 5knk_B 176 -- DE S G V R Q I F K A L K Q G E TT VIL P D H T P N V GG D MV N YF G V P L ASS N L SA K LI Q K T -- K A K A L F L Y A I R N E N --------- 242 (333)
T ss_dssp --SHHHHHHHHHHHH TTCEEEE CCCSCCSSCCEEEEE TTEEEEE CCHHHHHHHHH --CCEEEEEEEEE CSS---------
T ss_pred --CcchHHHHHHHHh cCCeEEEEe cCCCCCCceEEee CCCccccccHHHHHHHh c--CCeEEEEEEEE CCC---------
Q ss_pred CCCCCeEEEEE CCCcccHHHHHHHHHh CccHHHHHHHHHHHHHHHHHH
Q Wed_Dec_14_19: 229 P R F G Q K I T VLI G K P F SA L P VL E R L R A E N K SA V E M RK A L T D F I Q EE F Q H 276 (292)
Q Consensus 229 ~~~~~~ v~ i~~ g~ pi~~~~~~~~~~~~~~~~~~~~~~~~~~ i~~~ l~~ 276 (292)
..+++.|++|++.... .+..+.++++.+.+++.+.+
T Consensus 243 ----~~~~ i~~~~ pi~~~~~--------~~~~~~~~~~~~~ le~~ i~~ 278 (333)
T 5knk_B 243 ---- D G F T M H I E P M DE K I Y E -------- G TA DD G T Y VI H Q A I E Q LI Y Q 278 (333)
T ss_dssp ----SCEEEEEEE CCGGGGS--------SCHHHHHHHHHHHHHHHHHH
T ss_pred ----CcEEEEEEe cCCCCCC--------CCHHHHHHHHHHHHHHHHH c
No 4 3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf _A* 4g4m _A*
Probab=30.64 E-value=79 Score=16.68 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh cCCC
Q Wed_Dec_14_19: 267 T D F I Q EE F Q H L K T Q A E Q L H N H L Q P G 291 (292)
Q Consensus 267 ~~~ i~~~ l~~ l~~~~~~~~~~~~~~ 291 (292)
++.+..++.++..+...+..++.+|
T Consensus 3 adelykeledlqerlrklrkklrsg 27 (27)
T 3twe_A 3 A DE L Y K E L ED L Q E R L RK L RKK L R S G 27 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH C-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh cCC
No 5 5b16_B Microprocessor complex subunit DGCR8; endonuclease, RNAse III, trimeric complex, zinc finger, HYDR; 3.20A
{Homo sapiens}
Probab=29.03 E-value=74 Score=18.64 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh cCCC
Q Wed_Dec_14_19: 265 A L T D F I Q EE F Q H L K T Q A E Q L H N H L Q P G 291 (292)
Q Consensus 265 ~~~~~ i~~~ l~~ l~~~~~~~~~~~~~~ 291 (292)
.+.+.++++|..+..++++-..+...|
T Consensus 5 hILnKLqeEM~ klaeeree~ rkkp~~~ 31 (39)
T 5b16_B 5 H IL S K L Q EE M KR L A EE R EE T R H GG S R G 31 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHH C------
T ss_pred HHHHHHHHHHHHHHHHHHHh ccCCCcc
Done!
Please cite one of the following articles: Söding J, Biegert A, Lupas AN (2005) The HHpred interactive server for protein homology detection and structure prediction. Nucleic Acids Res 33 (suppl 2), W244-W248. Söding J (2005) Protein homology detection by HMM-HMM comparison. Bioinformatics 21: 951-960. Biegert A, Mayer C, Remmert M, Söding J, Lupas AN (2006) The MPI Bioinformatics Toolkit for protein sequence analysis. Nucleic Acids Res 34 (suppl 2), W335-W339. Hildebrand A, Remmert A, Biegert A, Söding J (2009) Fast and accurate automatic structure prediction with HHpred. Proteins 77 (S9), 128-132. Remmert M, Biegert A, Hauser A, Söding J (2012) HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment. Nature Methods 9 (2), 173-175. Meier A, Söding J (2015) Automatic Prediction of Protein 3D Structures by Probabilistic Multi-template Homology Modeling. PLoS Comput Biol 11 (10), e1004343. PSIPRED : Jones DT (1999) Protein secondary structure prediction based on position-specific scoring matrices. JMB 292: 195-202.
PDB : Bourne PE
et al. (2004) The distribution and query systems of the RCSB Protein Data Bank. NAR 32: D223.
logos.
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 l.1.1.1 PDB: 1k30 _A Probab=99.84 E-value=7.3e-21 Score=176.35 Aligned_cols=211 Identities=16% Similarity=0.110 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHhh---------cCEEechHHHHHHHHhcCCCCCEEEEeCCCccCchHHHHHHhhh------ccccChh Q Wed_Dec_14_19: 27 LVGTYSCFWTKYMN---------HLTVHNREVLYELIEKRGPATPLITVSNHQSCMDDPHLWGILKL------RHIWNLK 91 (292) Q Consensus 27 ~~~~~~~~~~~~~~---------~i~v~g~e~l~~~~~~~~~~~~~I~v~NH~s~~D~~~l~~~~~~------~~~~~~~ 91 (292) +..+...++..... ++++.|.|++| .++|+|+++||+|++|++++...+.. +...+ T Consensus 94 ~~~~~~~~~~~l~~~~~~~~~g~~v~v~g~e~lp-------~~~p~IivsNH~S~lD~~~l~~~l~~~~~~~~~~~~f-- 164 (367) T 1iuq_A 94 YYIFGQNYIRPLIDFGNSFVGNLSLFKDIEEKLQ-------QGHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIF-- 164 (367) T ss_dssp HHHHHHHHHGGGBCGGGCEEECHHHHHHHHHHHH-------TTCEEEEEECCCCTTHHHHHHHHHTTTCHHHHHHCEE-- T ss_pred HHHHHHHHHHHHHhhhhceEcceEEEEehhhhcC-------CCCcEEEEECCCCcchHHHHHHHHHHhCcchhhhhHH-- Q ss_pred hcCcchhHHHHHcCChH---HHHHHHhCCeEEEeCC----------chhccccccCccccccCCcCCCCCcccccCCccc Q Wed_Dec_14_19: 92 LMRWTPAAADICFTKEL---HSHFFSLGKCVPVCRG----------AEFFQAENEGKGVLDTGRHMPGAGKRREKGDGVY 158 (292) Q Consensus 92 ~~~~~~~~~~~~~~~~~---~~~~~~~~g~ipv~r~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (292) ++++.++..|+ +++.+... +++++|. +. ... T Consensus 165 ------vak~~l~~~P~~~~~~~~~~~~-~i~v~R~~g~~p~~~r~~~-----------------------------~~~ 208 (367) T 1iuq_A 165 ------VAGDRVLADPLCKPFSIGRNLI-CVYSKKHMFDIPELTETKR-----------------------------KAN 208 (367) T ss_dssp ------EECTHHHHCTTTHHHHHTSEEE-ECCCGGGTTSSGGGHHHHH-----------------------------HHH T ss_pred ------hhhhHhhhChHHHHHHHhcCce-EEEEecccCCchhhhhhhH-----------------------------HHH Q ss_pred hHHHHHHHHHHh-CCCeEEEeeCceecCC----C--ccccccchHH----HHHHhcCCCCE--EEEEEeechhccCCCCC Q Wed_Dec_14_19: 159 QKGMDFILEKLN-HGDWVHIFPEGKVNMS----S--EFLRFKWGIG----RLIAECHLNPI--ILPLWHVGMNDVLPNSP 225 (292) Q Consensus 159 ~~~~~~~~~~l~-~g~~v~IfPEG~~~~~----~--~~~~~k~G~~----~la~~~~~~~~--IvPv~i~g~~~~~~~~~ 225 (292) ..+++.+.+.|+ +|.+|+|||||+++.+ + .+.+|++|++ ++|.++ ++| |+||++. ....++... T Consensus 209 ~~~l~~~~~~L~~~G~~v~IFPEGtrs~~~~~~~~~~l~~fk~G~~~~~~~lA~~~--~~p~~IvPV~i~-~~~~~p~~~ 285 (367) T 1iuq_A 209 TRSLKEMALLLRGGSQLIWIAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHS--DVPGHLFPLALL-CHDIMPPPS 285 (367) T ss_dssp HHHHHHHHHHHHHCCCEEEECTTCSCCCBCTTTCCBCCCCCCHHHHHHHHHHHHTS--SSCEEEEEEEEE-CGGGSCCC- T ss_pred HHHHHHHHHHHHhCCeEEEEeCCCCcCCCCccCCccccCCCCchHHHHHHHHHHhc--CCCcEEEEEEEe-eeecCCCcc Q ss_pred -------CCCCCCCCeEEEEECCCcccHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC Q Wed_Dec_14_19: 226 -------PYFPRFGQKITVLIGKPFSALPVLERLRAENKSAVEMRKALTDFIQEEFQHLKTQAEQLHNHLQ 289 (292) Q Consensus 226 -------~~~~~~~~~v~i~~g~pi~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~ 289 (292) ......+.+++|+||+||..+++.. ...+..+..+++++.+++.+.++..+..+.....+ T Consensus 286 ~~~~~~~~~~~~~~~~v~v~~g~PI~~~~~~~----~~~~~~~~~~~l~~~v~~~i~~~l~~~~~~~~~~~ 352 (367) T 1iuq_A 286 QVEIEIGEKRVIAFNGAGLSVAPEISFEEIAA----THKNPEEVREAYSKALFDSVAMQYNVLKTAISGKQ 352 (367) T ss_dssp ---------CCCCCBCCEEEECCCCCHHHHHH----TSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC T ss_pred hHHHhhchhhccCCceEEEEECCCccHHHhhh----hccCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc No 2
