# Epicorr 1.20 # # nsamples= 127 # Nr. of epigenomes (samples) # wlen= 1000 # Window length (bp) # step= 1000 # Distance between window inits (bp) # => Window 'n' goes from (n-1)*step+1 to (n-1)*step+wlen (bp) # Chr_1= 14 (14) 107456889 bp # nwin1= 107455 # Nr. of windows for Chr_1 # Chr_2= 20 (20) 63088545 bp # nwin2= 63087 # Nr. of windows for Chr_2 # Epigen vocabulary: # epired= no # Reduced vocabulary (yes/no) # statemnemonic color shortname|longname # 0 - #000000 ---|--- # 1 A #FF0000 TssA|Active TSS # 2 F #FF4500 TssAFlnk|Flanking Active TSS # 3 5 #32CD32 TxFlnk|Transcr. at gene 5' and 3' # 4 T #008000 Tx|Strong transcription # 5 t #006400 TxWk|Weak transcription # 6 G #C2E105 EnhG|Genic enhancers # 7 E #FFFF00 Enh|Enhancers # 8 Z #66CDAA ZNF/Rpts|ZNF genes & repeats # 9 h #8A91D0 Het|Heterochromatin # 10 B #CD5C5C TssBiv|Bivalent/Poised # 11 b #E9967A BivFlnk|Flanking Bivalent TSS/Enh # 12 e #BDB76B EnhBiv|Bivalent Enhancer # 13 R #808080 ReprPC|Repressed PolyComb # 14 r #C0C0C0 ReprPCWk|Weak Repressed PolyComb # 15 q #EBEBEB Quies|Quiescent/Low #------------------------------------------------------------ >> 14_38724 20_61546 0.814 0 Chr14 (38723001-38724000) Chr20 (61545001-61546000) [-RRRRRRR-RRRRRqRR-RRRRr--rR-RqRrrrrrrRRRR-R-RRrr-rtqq--RRrR-RRRArqr---RRRAABB--RABArBr-B--RRq-BrRA-q-BbAA---qArRqqq-hqr5qRRq-Aq