BLASTP2 Result
of  Bork Group's Advanced BLAST2 Search Service at  EMBL.
back to BLAST2

BLASTP 2.0MP-WashU [16-Dec-1999] [irix6-r10k-L64 23:35:48 16-Dec-1999]

Copyright (C) 1996-1999 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-1999) http://blast.wustl.edu

Query=  RPE_YEAST
        (238 letters)

Database:  swiss Release 39.0 Mar.2003
           122,564 sequences; 44,986,459 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done


Summary:                                   
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

swiss|P46969|RPE_YEAST  Ribulose-phosphate 3-epimerase (E...  1251  6.7e-128  1
swiss|Q9L0Z5|RPE_STRCO  Ribulose-phosphate 3-epimerase (E...   495  8.6e-48   1
swiss|Q9CCP9|RPE_MYCLE  Ribulose-phosphate 3-epimerase (E...   493  1.4e-47   1
swiss|P71676|RPE_MYCTU  Ribulose-phosphate 3-epimerase (E...   493  1.4e-47   1
swiss|O34557|RPE_BACSU  Ribulose-phosphate 3-epimerase (E...   439  7.4e-42   1
swiss|P74061|RPE_SYNY3  Ribulose-phosphate 3-epimerase (E...   420  7.6e-40   1
swiss|P51012|RPE_RHOCA  Ribulose-phosphate 3-epimerase (E...   400  1.0e-37   1
swiss|Q43843|RPE_SOLTU  Ribulose-phosphate 3-epimerase, c...   396  2.7e-37   1
swiss|P32661|RPE_ECOLI  Ribulose-phosphate 3-epimerase (E...   388  1.9e-36   1
swiss|Q9ZTP5|RPE_ORYSA  Ribulose-phosphate 3-epimerase, c...   388  1.9e-36   1
swiss|Q43157|RPE_SPIOL  Ribulose-phosphate 3-epimerase, c...   387  2.4e-36   1
swiss|O66107|RPE_TREPA  Ribulose-phosphate 3-epimerase (E...   384  5.0e-36   1
swiss|O67098|RPE_AQUAE  Ribulose-phosphate 3-epimerase (E...   381  1.0e-35   1
swiss|Q8K940|RPE_BUCAP  Ribulose-phosphate 3-epimerase (E...   381  1.0e-35   1
swiss|P57603|RPE_BUCAI  Ribulose-phosphate 3-epimerase (E...   373  7.3e-35   1
swiss|O84123|RPE_CHLTR  Ribulose-phosphate 3-epimerase (E...   369  1.9e-34   1
swiss|Q9Z8Z9|RPE_CHLPN  Ribulose-phosphate 3-epimerase (E...   367  3.2e-34   1
swiss|Q58093|RPE_METJA  Ribulose-phosphate 3-epimerase (E...   363  8.4e-34   1
swiss|P45455|RPE_SERMA  Ribulose-phosphate 3-epimerase (E...   362  1.1e-33   1
swiss|P44756|RPE_HAEIN  Ribulose-phosphate 3-epimerase (E...   360  1.7e-33   1
swiss|Q9PKR7|RPE_CHLMU  Ribulose-phosphate 3-epimerase (E...   359  2.2e-33   1
swiss|P40117|RPEC_ALCEU Ribulose-phosphate 3-epimerase, c...   340  2.3e-31   1
swiss|Q04539|RPEP_ALCEU Ribulose-phosphate 3-epimerase, p...   336  6.1e-31   1
swiss|P51013|RPE_RHORU  Ribulose-phosphate 3-epimerase (E...   331  2.1e-30   1
swiss|Q9ZJ75|RPE_HELPJ  Ribulose-phosphate 3-epimerase (E...   322  1.9e-29   1
swiss|P56188|RPE_HELPY  Ribulose-phosphate 3-epimerase (E...   312  2.1e-28   1
swiss|P32719|ALSE_ECOLI D-allulose-6-phosphate 3-epimeras...   296  1.1e-26   1
swiss|P39362|SGCE_ECOLI Protein sgcE (EC 5.1.3.-).             249  1.0e-21   1
swiss|P75522|RPE_MYCPN  Probable ribulose-phosphate 3-epi...   122  3.1e-06   1
swiss|P47358|RPE_MYCGE  Probable ribulose-phosphate 3-epi...   118  8.8e-06   1
swiss|Q48907|HUMS_METAM Hexulose-6-phosphate synthase (EC...    85  0.078     1
swiss|Q8U1U1|PYRF_PYRFU Orotidine 5'-phosphate decarboxyl...    70  0.55      2
swiss|O74110|PYRF_THEAC Orotidine 5'-phosphate decarboxyl...    76  0.62      1
swiss|Q98AZ6|THIG_RHILO Thiazole biosynthesis protein thiG.     75  0.83      1
swiss|Q8PV88|PYRF_METMA Orotidine 5'-phosphate decarboxyl...    69  0.85      2
swiss|P58264|THIG_RHIME Thiazole biosynthesis protein thiG.     71  0.89      2
swiss|P30139|THIG_ECOLI Thiazole biosynthesis protein thiG.     73  0.95      1
swiss|P42405|HUMS_BACSU Probable hexulose-6-phosphate syn...    71  0.97      1
swiss|Q15274|NADC_HUMAN Nicotinate-nucleotide pyrophospho...    73  0.98      1
swiss|P23474|RUBR_CLOST Rubredoxin (Rd).                        52  0.98      1
swiss|Q9UZ35|PYRF_PYRAB Orotidine 5'-phosphate decarboxyl...    70  0.99      1
swiss|O58462|PYRF_PYRHO Orotidine 5'-phosphate decarboxyl...    67  0.995     2
swiss|Q91X91|NADC_MOUSE Nicotinate-nucleotide pyrophospho...    71  0.998     1
swiss|Q8TS37|PYRF_METAC Orotidine 5'-phosphate decarboxyl...    65  0.999     2
swiss|P44506|YGGS_HAEIN Protein HI0090.                         69  0.9994    1
swiss|O31139|HIS6_CORGL Imidazole glycerol phosphate synt...    61  0.9996    2
swiss|P52055|YPI1_VIBAL Hypothetical protein in pilT-proC...    68  0.99991   1
     


Query sequence and locally-aligned HSPs from database sequences

                        0         50        100        150       200       
                        |          |          |          |         |       |238
   RPE_YEAST           | __________________________________________________
^ v swiss|P46969|RPE_Y | __________________________________________________
^ v swiss|Q9L0Z5|RPE_S |  _______________________________________________
^ v swiss|Q9CCP9|RPE_M | ________________________________________________
^ v swiss|P71676|RPE_M | _______________________________________________
^ v swiss|O34557|RPE_B | _______________________________________________
^ v swiss|P74061|RPE_S |  ________________________________________________
^ v swiss|P51012|RPE_R |  ____________________________________________
^ v swiss|Q43843|RPE_S |  _______________________________________________
^ v swiss|P32661|RPE_E | ________________________________________________
^ v swiss|Q9ZTP5|RPE_O |  _______________________________________________
^ v swiss|Q43157|RPE_S |  _______________________________________________
^ v swiss|O66107|RPE_T |  ____________________________________________
^ v swiss|O67098|RPE_A |  _____________________________________________
^ v swiss|Q8K940|RPE_B | ________________________________________________
^ v swiss|P57603|RPE_B | ________________________________________________
^ v swiss|O84123|RPE_C |  _______________________________________________
^ v swiss|Q9Z8Z9|RPE_C |  ____________________________________________
^ v swiss|Q58093|RPE_M |  _________________________________________________
^ v swiss|P45455|RPE_S | _____________________________________________
^ v swiss|P44756|RPE_H | ________________________________________________
^ v swiss|Q9PKR7|RPE_C |  _______________________________________________
^ v swiss|P40117|RPEC_ |  ____________________________________________
^ v swiss|Q04539|RPEP_ |  ____________________________________________
^ v swiss|P51013|RPE_R | _______________________________________________
^ v swiss|Q9ZJ75|RPE_H |  ____________________________________________
^ v swiss|P56188|RPE_H |  ____________________________________________
^ v swiss|P32719|ALSE_ |  _____________________________________________
^ v swiss|P39362|SGCE_ |  _____________________________________________
^ v swiss|P75522|RPE_M |        _____________________________________
^ v swiss|P47358|RPE_M |                ____________________________
^ v swiss|Q48907|HUMS_ |                                       _______
^ v swiss|Q8U1U1|PYRF_ | _______              ____________________________
^ v swiss|O74110|PYRF_ |                                         ________
^ v swiss|Q98AZ6|THIG_ |                                     ______________
^ v swiss|Q8PV88|PYRF_ | ______                          _________________
^ v swiss|P58264|THIG_ |        __                            _________
^ v swiss|P30139|THIG_ |                         __________________________
^ v swiss|P42405|HUMS_ |                                  _______________
^ v swiss|Q15274|NADC_ |                                    ______________
^ v swiss|P23474|RUBR_ |              ________
^ v swiss|Q9UZ35|PYRF_ |                        __________________________
^ v swiss|O58462|PYRF_ |  ________                   ____________________
^ v swiss|Q91X91|NADC_ |                                    __________
^ v swiss|Q8TS37|PYRF_ | ______                                __________
^ v swiss|P44506|YGGS_ |                    __________________________
^ v swiss|O31139|HIS6_ |                    ________         _______
^ v swiss|P52055|YPI1_ |                            __________________


Alignments:


^ = swiss|P46969|RPE_YEAST Ribulose-phosphate 3-epimerase (EC 5.1.3.1)
            (Pentose-5-phosphate 3- epimerase) (PPE) (RPE).
            Length = 238

                        0         50        100        150       200       
                        |          |          |          |         |       |238
swiss|P46969|RPE_YEAS  | __________________________________________________
Local hits (HSPs)      | __________________________________________________

 Score = 1251 (445.4 bits), Expect = 6.7e-128, P = 6.7e-128
 Identities = 238/238 (100%), Positives = 238/238 (100%)

Query:     1 MVKPIIAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSV 60
             MVKPIIAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSV
Sbjct:     1 MVKPIIAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSV 60

Query:    61 PRPGDASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDPLHLVKLIKS 120
             PRPGDASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDPLHLVKLIKS
Sbjct:    61 PRPGDASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDPLHLVKLIKS 120

Query:   121 KGIKAACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQKFMEDMMPKVETLRAKFPHL 180
             KGIKAACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQKFMEDMMPKVETLRAKFPHL
Sbjct:   121 KGIKAACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQKFMEDMMPKVETLRAKFPHL 180

Query:   181 NIQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHDVISFMKEEVSKELRSRDLLD 238
             NIQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHDVISFMKEEVSKELRSRDLLD
Sbjct:   181 NIQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHDVISFMKEEVSKELRSRDLLD 238


^ = swiss|Q9L0Z5|RPE_STRCO Ribulose-phosphate 3-epimerase (EC 5.1.3.1)
            (Pentose-5-phosphate 3- epimerase) (PPE) (R5P3E).
            Length = 228

                        0         50        100        150        200      
                        |          |          |          |          |      |228
swiss|Q9L0Z5|RPE_STRC  | __________________________________________________
Local hits (HSPs)      |  _____________________________________________

 Score = 495 (179.3 bits), Expect = 8.6e-48, P = 8.6e-48
 Identities = 102/225 (45%), Positives = 141/225 (62%)

Query:     6 IAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSVPRPGD 65
             I PSIL++DFA L  E   V   GADWLH+DVMD HFVPN+TLG P+V SL R+   P  
Sbjct:     5 INPSILSADFARLADEAKAV--EGADWLHVDVMDNHFVPNLTLGVPVVESLARATDTP-- 60

Query:    66 ASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDPLHLVKLIKSKGIKA 125
                         DCH+M+E P++W   + + GA   TFH EA   P+ L + I++KG +A
Sbjct:    61 -----------LDCHLMIEAPDRWAPQYVEAGAGSVTFHAEAAAAPVRLAREIRAKGARA 109

Query:   126 ACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQKFMEDMMPKVETLRAKFP-H---LN 181
             + A+KP T V+   +L P LDM L+MTVEPGFGGQ F++ M+PK+   R     H   L 
Sbjct:   110 SMALKPATPVEPYEDLLPELDMLLIMTVEPGFGGQAFLDIMLPKIRRTRELIKKHGLELW 169

Query:   182 IQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHDVISFMKEE 226
             +QVDGG+   TI + A AGA+V VAG++V+ A+DP + +  ++ +
Sbjct:   170 LQVDGGVSAATIERCADAGADVFVAGSAVYGASDPAEAVRALRTQ 214


^ = swiss|Q9CCP9|RPE_MYCLE Ribulose-phosphate 3-epimerase (EC 5.1.3.1)
            (Pentose-5-phosphate 3- epimerase) (PPE) (R5P3E).
            Length = 224

                        0          50        100        150        200     
                        |           |          |          |          |     |224
swiss|Q9CCP9|RPE_MYCL  | __________________________________________________
Local hits (HSPs)      | __________________________________________________

 Score = 493 (178.6 bits), Expect = 1.4e-47, P = 1.4e-47
 Identities = 103/236 (43%), Positives = 148/236 (62%)

Query:     4 PIIAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSVPRP 63
             P+IAPSILA+DFA L  E   V  A ADWLH+DVMDGHFVPN+T+G P+V SL  +   P
Sbjct:     3 PLIAPSILAADFARLTDEAAVV--ASADWLHVDVMDGHFVPNLTIGLPVVQSLLAASDIP 60

Query:    64 GDASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDPLHLVKLIKSKGI 123
                           DCH+M++NP++W   +A+ GA   TFH EAT +P+ +   I++ G 
Sbjct:    61 -------------MDCHLMIDNPDRWAPPYAEAGAYNVTFHAEATDNPVGVAHDIRTAGA 107

Query:   124 KAACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQKFMEDMMPKVETLRAKFP--HLN 181
             KA   +KPGT ++   ++ PH D  L+M+VEPGFGGQ F+ +++ KV T+R       L 
Sbjct:   108 KAGIGVKPGTPLNPYLDILPHFDTLLIMSVEPGFGGQAFIPEVLSKVRTVRKMVDAGELT 167

Query:   182 I--QVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHDVISFMKEE---VSKELR 232
             I  ++DGG+  +TI +AA+AG +  VAG++V+ AADP   ++ ++     VS  LR
Sbjct:   168 ILVEIDGGINADTIEQAAEAGVDCFVAGSAVYGAADPSAAVAALRRRAGAVSPHLR 223


^ = swiss|P71676|RPE_MYCTU Ribulose-phosphate 3-epimerase (EC 5.1.3.1)
            (Pentose-5-phosphate 3- epimerase) (PPE) (R5P3E).
            Length = 229

                        0         50        100        150        200      
                        |          |          |          |          |      |229
swiss|P71676|RPE_MYCT  | __________________________________________________
Local hits (HSPs)      |  ______________________________________________

 Score = 493 (178.6 bits), Expect = 1.4e-47, P = 1.4e-47
 Identities = 98/227 (43%), Positives = 146/227 (64%)

Query:     4 PIIAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSVPRP 63
             P+IAPSILA+DFA L  E    +N GADWLH+DVMDGHFVPN+T+G P+V SL      P
Sbjct:     8 PLIAPSILAADFARLADEA-AAVN-GADWLHVDVMDGHFVPNLTIGLPVVESLLAVTDIP 65

Query:    64 GDASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDPLHLVKLIKSKGI 123
                           DCH+M++NP++W   +A+ GA   TFH EAT +P+ + + I++ G 
Sbjct:    66 -------------MDCHLMIDNPDRWAPPYAEAGAYNVTFHAEATDNPVGVARDIRAAGA 112

Query:   124 KAACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQKFMEDMMPKVETLRAKFP--HLN 181
             KA  ++KPGT ++   ++ PH D  LVM+VEPGFGGQ+F+ +++ KV  +R       L 
Sbjct:   113 KAGISVKPGTPLEPYLDILPHFDTLLVMSVEPGFGGQRFIPEVLSKVRAVRKMVDAGELT 172

Query:   182 I--QVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHDVISFMKEE 226
             I  ++DGG+  +TI +AA+AG +  VAG++V+ A DP   ++ ++ +
Sbjct:   173 ILVEIDGGINDDTIEQAAEAGVDCFVAGSAVYGADDPAAAVAALRRQ 219


^ = swiss|O34557|RPE_BACSU Ribulose-phosphate 3-epimerase (EC 5.1.3.1)
            (Pentose-5-phosphate 3- epimerase) (PPE) (R5P3E).
            Length = 217

                        0          50         100         150        200   
                        |           |           |           |          |   |217
swiss|O34557|RPE_BACS  | __________________________________________________
Local hits (HSPs)      | _________________________________________________

 Score = 439 (159.6 bits), Expect = 7.4e-42, P = 7.4e-42
 Identities = 97/226 (42%), Positives = 137/226 (60%)

Query:     1 MVKPIIAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSV 60
             M+K  +APSIL++DFA LG E   V   GAD +HIDVMDGHFVPNIT+G  IV ++R   
Sbjct:     1 MIK--VAPSILSADFAALGNEIKDVEKGGADCIHIDVMDGHFVPNITIGPLIVEAVRPVT 58

Query:    61 PRPGDASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDPLHLVKLIKS 120
               P              D H+M+E P++++  FAK GAD  + H EA       ++LIK 
Sbjct:    59 DLP-------------LDVHLMIEEPDRYIPAFAKAGADILSVHAEACPHLHRTIQLIKE 105

Query:   121 KGIKAACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQKFMEDMMPKVETLRAKFPH- 179
             +G+KA   + P T V V+  +   LD+ L+MTV PGFGGQKF+  ++PK++ ++      
Sbjct:   106 QGVKAGVVLNPHTPVQVIEHVFDDLDLVLLMTVNPGFGGQKFIHSVLPKIKEVKRMADEK 165

Query:   180 ----LNIQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHDVIS 221
                 L I+VDGG+ KET P   +AGAN++VAG++V+  +D    IS
Sbjct:   166 GKKDLLIEVDGGVNKETAPLVIEAGANLLVAGSAVYGQSDRKKAIS 211


^ = swiss|P74061|RPE_SYNY3 Ribulose-phosphate 3-epimerase (EC 5.1.3.1)
            (Pentose-5-phosphate 3- epimerase) (PPE) (R5P3E).
            Length = 229

                        0         50        100        150        200      
                        |          |          |          |          |      |229
swiss|P74061|RPE_SYNY  | __________________________________________________
Local hits (HSPs)      |  _______________________________________________

 Score = 420 (152.9 bits), Expect = 7.6e-40, P = 7.6e-40
 Identities = 97/232 (41%), Positives = 135/232 (58%)

Query:     5 IIAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSVPRPG 64
             ++APSIL++DF+ LG E   V  AGADW+H+DVMDG FVPNIT+G  IV ++R   P   
Sbjct:     5 VVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIR---PL-- 59

Query:    65 DASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDP-LHLVKL-IKSKG 122
                 T+K      D H+M+  PEK+V+DFAK GAD  + H E    P LH     I+  G
Sbjct:    60 ----TKKT----LDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELG 111

Query:   123 IKAACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQKFMEDMMPKVETLRAKFPHLN- 181
              KA   + P T +D L  + P  D+ L+M+V PGFGGQ F+ +++PK+  LR        
Sbjct:   112 KKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGL 171

Query:   182 ---IQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHDVISFMKEEVSKE 230
                I+VDGGL      +  +AGAN IVAG++VF A +  + I+ ++     E
Sbjct:   172 DPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSKRPE 223


^ = swiss|P51012|RPE_RHOCA Ribulose-phosphate 3-epimerase (EC 5.1.3.1)
            (Pentose-5-phosphate 3- epimerase) (PPE) (R5P3E).
            Length = 228

                        0         50        100        150        200      
                        |          |          |          |          |      |228
swiss|P51012|RPE_RHOC  | __________________________________________________
Local hits (HSPs)      |  __________________________________________

 Score = 400 (145.9 bits), Expect = 1.0e-37, P = 1.0e-37
 Identities = 87/208 (41%), Positives = 122/208 (58%)

Query:     6 IAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSVPRPGD 65
             IAPSIL++DFA+ G E   +   GADW+H+DVMDGHFVPN+T G P V + R+ V     
Sbjct:     9 IAPSILSADFADFGREIQAIEAQGADWVHVDVMDGHFVPNLTFGPPAVAAFRKHVK---- 64

Query:    66 ASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDPLHLVKLIKSKGIKA 125
                         D H+M+   + ++D +A+ GAD  T H EA       ++ I++ G+K+
Sbjct:    65 ---------TVMDVHLMISPVDAYIDAYAQAGADVLTAHVEAGPHIHRTLQAIRAAGMKS 115

Query:   126 ACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQKFMEDMMPKVETLRAKFPH--LNIQ 183
               AI PGT  + +  +    D+  VMTV PGFGGQK++ DM  KV  LRA      ++I+
Sbjct:   116 GVAINPGTPAEAIEHVLDIADVVCVMTVNPGFGGQKYI-DMTAKVRKLRAMIGDRPVHIE 174

Query:   184 VDGGLGKETIPKAAKAGANVIVAGTSVF 211
             +DGG+   T P  A AGA+V VAG+ VF
Sbjct:   175 IDGGMDPVTAPLMAAAGADVFVAGSGVF 202


^ = swiss|Q43843|RPE_SOLTU Ribulose-phosphate 3-epimerase, chloroplast precursor
            (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (RPE) (R5P3E)
            (Fragment).
            Length = 280

                        0         60        120        180       240       
                        |          |          |          |         |       |280
swiss|Q43843|RPE_SOLT  | __________________________________________________
Local hits (HSPs)      |            _____________________________________

 Score = 396 (144.5 bits), Expect = 2.7e-37, P = 2.7e-37
 Identities = 91/227 (40%), Positives = 131/227 (57%)

Query:     5 IIAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSVPRPG 64
             I++PSIL+++F+ LG +   +  AG DW+H+DVMDG FVPNIT+G  +V SLR     P 
Sbjct:    58 IVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPITDLP- 116

Query:    65 DASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDPLHL---VKLIKSK 121
                          D H+M+  P++ V DF K GAD  + H E +   +HL   +  IKS 
Sbjct:   117 ------------LDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSST-IHLHRTINQIKSL 163

Query:   122 GIKAACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQKFMEDMMPKVETLRAKFPH-- 179
             G KA   + PGT +  +  +   +D+ L+M+V PGFGGQ F+E  + K+  LR       
Sbjct:   164 GAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERG 223

Query:   180 LN--IQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHDVISFMK 224
             LN  I+VDGG+G +   K  +AGAN +VAG++VF A D  + I  +K
Sbjct:   224 LNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIK 270


^ = swiss|P32661|RPE_ECOLI Ribulose-phosphate 3-epimerase (EC 5.1.3.1)
            (Pentose-5-phosphate 3- epimerase) (PPE) (R5P3E).
            Length = 225

                        0          50        100        150        200     
                        |           |          |          |          |     |225
swiss|P32661|RPE_ECOL  | __________________________________________________
Local hits (HSPs)      | _________________________________________________

 Score = 388 (141.6 bits), Expect = 1.9e-36, P = 1.9e-36
 Identities = 91/233 (39%), Positives = 134/233 (57%)

Query:     1 MVKPIIAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSV 60
             M + +IAPSIL++DFA LG +  K + AGAD +H DVMD H+VPN+T+G  ++ SLR   
Sbjct:     1 MKQYLIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNY- 59

Query:    61 PRPGDASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDPLHLVKLIKS 120
                G         TA  D H+MV+  ++ V DFA  GA   TFH EA++     ++LIK 
Sbjct:    60 ---GI--------TAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASEHVDRTLQLIKE 108

Query:   121 KGIKAACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQKFMEDMMPKVETLRAKFPH- 179
              G KA     P T +  L  +   LD+ L+M+V PGFGGQ F+   + K+  +R +    
Sbjct:   109 NGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFGGQSFIPQTLDKLREVRRRIDES 168

Query:   180 ---LNIQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHDVISFMKEEVSK 229
                + ++VDGG+    I + A AGA++ VAG+++F   D   VI  M+ E++K
Sbjct:   169 GFDIRLEVDGGVKVNNIGEIAAAGADMFVAGSAIFDQPDYKKVIDEMRSELAK 221


^ = swiss|Q9ZTP5|RPE_ORYSA Ribulose-phosphate 3-epimerase, chloroplast precursor
            (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (RPE) (R5P3E).
            Length = 274

                        0         60        120        180        240      
                        |          |          |          |          |      |274
swiss|Q9ZTP5|RPE_ORYS  | __________________________________________________
Local hits (HSPs)      |          ______________________________________

 Score = 388 (141.6 bits), Expect = 1.9e-36, P = 1.9e-36
 Identities = 92/227 (40%), Positives = 130/227 (57%)

Query:     5 IIAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSVPRPG 64
             I++PSIL+++F+ LG +   V  AG DW+H+DVMDG FVPNIT+G  +V +LR     P 
Sbjct:    52 IVSPSILSANFSKLGEQVKAVEVAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP- 110

Query:    65 DASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDPLHL---VKLIKSK 121
                          D H+M+  PE+ V DF K GAD  + H E +   +HL   V  IKS 
Sbjct:   111 ------------LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST-IHLHRTVNQIKSL 157

Query:   122 GIKAACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQKFMEDMMPKVETLRAKFPH-- 179
             G KA   + P T +  +  +   +D+ L+M+V PGFGGQ F+E  + K+  LR       
Sbjct:   158 GAKAGVVLNPATPLTAIDYVLDVVDLVLIMSVNPGFGGQSFIESQVKKIAELRKYVAEKG 217

Query:   180 LN--IQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHDVISFMK 224
             +N  I+VDGG+G +   K  +AGAN IVAG++VF A D  + I  +K
Sbjct:   218 VNPWIEVDGGVGPKNAYKVIEAGANAIVAGSAVFGAPDYAEAIKGIK 264


^ = swiss|Q43157|RPE_SPIOL Ribulose-phosphate 3-epimerase, chloroplast precursor
            (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (RPE) (R5P3E).
            Length = 285

                        0         60        120        180       240       
                        |          |          |          |         |       |285
swiss|Q43157|RPE_SPIO  | __________________________________________________
Local hits (HSPs)      |             _____________________________________

 Score = 387 (141.3 bits), Expect = 2.4e-36, P = 2.4e-36
 Identities = 93/226 (41%), Positives = 129/226 (57%)

Query:     5 IIAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSVPRPG 64
             I++PSIL+++FA LG +   V  AG DW+H+DVMDG FVPNIT+G  +V +LR     P 
Sbjct:    63 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP- 121

Query:    65 DASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYE-ATQDPLH-LVKLIKSKG 122
                          D H+M+  PE+ V DF K GAD  + H E A+   LH  V  IKS G
Sbjct:   122 ------------LDVHLMIVEPEQRVPDFIKAGADIVSVHCELASTIHLHRTVNQIKSLG 169

Query:   123 IKAACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQKFMEDMMPKVETLRAKFPH--L 180
              KA   + PGT +  +  +   +D+ L+M+V PGFGGQ F+E  + K+  LR       +
Sbjct:   170 AKAGVVLNPGTPLSTIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRKMCVEKGV 229

Query:   181 N--IQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHDVISFMK 224
             N  I+VDGG+      K  +AGAN +VAG++VF A D  + I  +K
Sbjct:   230 NPWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 275


^ = swiss|O66107|RPE_TREPA Ribulose-phosphate 3-epimerase (EC 5.1.3.1)
            (Pentose-5-phosphate 3- epimerase) (PPE) (R5P3E).
            Length = 218

                        0          50         100        150        200    
                        |           |           |          |          |    |218
swiss|O66107|RPE_TREP  | __________________________________________________
Local hits (HSPs)      |  ______________________________________________

 Score = 384 (140.2 bits), Expect = 5.0e-36, P = 5.0e-36
 Identities = 84/212 (39%), Positives = 123/212 (58%)

Query:     6 IAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSVPRPGD 65
             +APS+L++DF+ L      +   GA W+H+DVMDGHFVPN+T G P++  LR     P  
Sbjct:     7 LAPSLLSADFSALDRALVYLEAHGAQWVHLDVMDGHFVPNLTFGAPVLRCLRSKTHLP-- 64

Query:    66 ASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDPLHLVKLIKSKGIKA 125
                        FD H+MV  P   ++DF + GAD  TFH EA      L+  I+ +G+K 
Sbjct:    65 -----------FDVHLMVSRPADLIEDFVQAGADFLTFHIEAEVHAHRLIHAIRGRGVKV 113

Query:   126 ACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQKFMEDMMPKVETL---RAK--FPHL 180
               ++ P T V  L E+ P +D+ LVMTV PGF GQ+ +   + KV  L   R +  + ++
Sbjct:   114 GISLVPSTPVAALSEVLPFVDLVLVMTVNPGFSGQQMIAHCLSKVSALVQMRTERGYSYM 173

Query:   181 NIQVDGGLGKETIPKAAKAGANVIVAGTSVFT 212
              I VDGG+   T+P+A  AGA+VIV+G++ F+
Sbjct:   174 -ISVDGGIDCRTLPQALDAGADVIVSGSAFFS 204


^ = swiss|O67098|RPE_AQUAE Ribulose-phosphate 3-epimerase (EC 5.1.3.1)
            (Pentose-5-phosphate 3- epimerase) (PPE) (R5P3E).
            Length = 222

                        0          50         100        150        200    
                        |           |           |          |          |    |222
swiss|O67098|RPE_AQUA  | __________________________________________________
Local hits (HSPs)      | ______________________________________________

 Score = 381 (139.2 bits), Expect = 1.0e-35, P = 1.0e-35
 Identities = 82/215 (38%), Positives = 123/215 (57%)

Query:     5 IIAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSVPRPG 64
             ++APSILA D+  +G +    I  GAD LH DVMDGHFVPNIT G  I++ +R+    P 
Sbjct:     3 LLAPSILAGDWWCIGEQIQATIRGGADILHYDVMDGHFVPNITAGYEILSHIRKRASLPI 62

Query:    65 DASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDPLHLVKLIKSKGIK 124
             DA             H+M+ENP+K++  F + GA+  + H E        ++LIK  G K
Sbjct:    63 DA-------------HLMIENPDKYIPKFVEAGANWISVHIENNYHIHRTLQLIKELGAK 109

Query:   125 AACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQKFMEDMMPKVETLRAKFPHLN--- 181
             A   + PGTS+  + E   + D  L+M+V PGF GQKF+E  + ++  L+     +N   
Sbjct:   110 AGVVVNPGTSLSAIEEALYYADYVLLMSVNPGFSGQKFIERSIERLRILKEMRDRINPSC 169

Query:   182 -IQVDGGLGKETIPKAAKAGANVIVAGTSVFTAAD 215
              I++DGG+ +  I +  +AGA+V+V G+ +F A D
Sbjct:   170 LIEIDGGIKENNIAEVVRAGADVVVVGSGIFGAKD 204


^ = swiss|Q8K940|RPE_BUCAP Ribulose-phosphate 3-epimerase (EC 5.1.3.1)
            (Pentose-5-phosphate 3- epimerase) (PPE) (R5P3E).
            Length = 228

                        0         50        100        150        200      
                        |          |          |          |          |      |228
swiss|Q8K940|RPE_BUCA  | __________________________________________________
Local hits (HSPs)      | _______________________________________________

 Score = 381 (139.2 bits), Expect = 1.0e-35, P = 1.0e-35
 Identities = 88/231 (38%), Positives = 133/231 (57%)

Query:     1 MVKPIIAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSV 60
             M K  +A SIL++DFA LG +  K I+AG+DW+H DVMD H+VPN+T+G  I+ +LR   
Sbjct:     1 MKKFFLASSILSADFARLGEDTKKAIDAGSDWIHFDVMDNHYVPNLTMGPMILKALRNY- 59

Query:    61 PRPGDASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDPLHLVKLIKS 120
                    N     T   D H+MV+  +  +  FA+ GAD  TFH E+T      + LIK 
Sbjct:    60 -------NI----TVPIDVHLMVKPVDNLIPQFAEAGADFITFHPESTDHIDRTLNLIKE 108

Query:   121 KGIKAACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQKFMEDMMPKVETLRAKFP-- 178
              G KA  A+ P TS++ L  +   LD+ L+M+V PGFG Q F+     K+  +R K    
Sbjct:   109 CGCKAGLALNPATSLNFLDYVMEKLDLILLMSVNPGFGNQSFLPTSFNKLREVRKKIELN 168

Query:   179 --HLNIQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHDVISFMKEEV 227
               ++ ++VDGG+  E I + A +GANV V G+ +F   D + +I  +++++
Sbjct:   169 SSNILLEVDGGVKLENISEVAFSGANVFVIGSGIFGYTDYNVIIKKIRKKL 219


^ = swiss|P57603|RPE_BUCAI Ribulose-phosphate 3-epimerase (EC 5.1.3.1)
            (Pentose-5-phosphate 3- epimerase) (PPE) (R5P3E).
            Length = 228

                        0         50        100        150        200      
                        |          |          |          |          |      |228
swiss|P57603|RPE_BUCA  | __________________________________________________
Local hits (HSPs)      | _______________________________________________

 Score = 373 (136.4 bits), Expect = 7.3e-35, P = 7.3e-35
 Identities = 91/231 (39%), Positives = 131/231 (56%)

Query:     1 MVKPIIAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSV 60
             M K  +APSIL++DFA LG +  KVI+AG+D +H DVMD H+VPN+++G  I+ SLR   
Sbjct:     1 MNKFFLAPSILSADFARLGEDIKKVIDAGSDLIHFDVMDNHYVPNLSMGPMILESLRNY- 59

Query:    61 PRPGDASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDPLHLVKLIKS 120
                    N     TA  D H+MV+  +  +  FAK GA   TFH EAT      + LIK 
Sbjct:    60 -------NI----TAPIDVHLMVKPVDNLIPQFAKAGATFITFHPEATLHIERTLNLIKE 108

Query:   121 KGIKAACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQKFMEDMMPKVETLR----AK 176
              G KA  A  P T ++ L  +   LD+ L+M+V PGFG Q F+     K+  +R    A 
Sbjct:   109 NGCKAGLAFNPATPLNFLDYILEKLDLILLMSVNPGFGNQSFLPSTFNKLREVRKIIDAN 168

Query:   177 FPHLNIQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHDVISFMKEEV 227
             F  + ++VDGG+  + I   A AGANV V G+ +F  ++   VI  +++++
Sbjct:   169 FSDILLEVDGGVKLDNIADIACAGANVFVMGSGLFKYSNYKLVIEKIRKKL 219


^ = swiss|O84123|RPE_CHLTR Ribulose-phosphate 3-epimerase (EC 5.1.3.1)
            (Pentose-5-phosphate 3- epimerase) (PPE) (R5P3E).
            Length = 233

                        0         50        100        150       200       
                        |          |          |          |         |       |233
swiss|O84123|RPE_CHLT  | __________________________________________________
Local hits (HSPs)      |    _____________________________________________

 Score = 369 (135.0 bits), Expect = 1.9e-34, P = 1.9e-34
 Identities = 84/229 (36%), Positives = 132/229 (57%)

Query:     5 IIAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSVPRPG 64
             ++APSI+ +D A +G E   +  +GAD +HIDVMDGHFVPNIT G  +V ++ RS     
Sbjct:    12 LVAPSIMGADLACIGREARNIEESGADLIHIDVMDGHFVPNITFGPGVVAAINRS----- 66

Query:    65 DASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDPLHLVKLIKSKGIK 124
                 TE     F + H M+  P ++V+ F K GAD+   H+EA ++   ++  I+  G++
Sbjct:    67 ----TE----LFLEVHAMIYTPFEFVEAFVKAGADRIIVHFEAAENIKEIISYIQKCGVQ 118

Query:   125 AACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQKFMEDMMPKVETLRAKFPHLN--- 181
             A  A  P TS++ +    P  D+ L+M+V PGF GQKF+ D + +++ ++     L    
Sbjct:   119 AGVAFSPETSIEFVTSFIPLCDVILLMSVHPGFCGQKFIPDTIERIQFVKQAIQVLGREG 178

Query:   182 ---IQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHDVISFMKEEV 227
                I+VDGG+ KE+     +AGA+++VA +  F      D I+ MKE+V
Sbjct:   179 SCLIEVDGGIDKESARACREAGADILVAASYFFEK----DSIN-MKEKV 222


^ = swiss|Q9Z8Z9|RPE_CHLPN Ribulose-phosphate 3-epimerase (EC 5.1.3.1)
            (Pentose-5-phosphate 3- epimerase) (PPE) (R5P3E).
            Length = 229

                        0         50        100        150        200      
                        |          |          |          |          |      |229
swiss|Q9Z8Z9|RPE_CHLP  | __________________________________________________
Local hits (HSPs)      |  ___________________________________________

 Score = 367 (134.2 bits), Expect = 3.2e-34, P = 3.2e-34
 Identities = 76/215 (35%), Positives = 124/215 (57%)

Query:     5 IIAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSVPRPG 64
             ++ PSI+ +D   LG E  K+  AG+D++HID+MDGHFVPN+T G  I+ ++ RS     
Sbjct:     8 LVGPSIMGADLTCLGVEAKKLEQAGSDFIHIDIMDGHFVPNLTFGPGIIAAINRS----- 62

Query:    65 DASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDPLHLVKLIKSKGIK 124
                 T+     F + H M+ NP ++++ F + GAD+   H+EA++D   L+  IK  G++
Sbjct:    63 ----TD----LFLEVHAMIYNPFEFIESFVRSGADRIIVHFEASEDIKELLSYIKKCGVQ 114

Query:   125 AACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQKFMEDMMPKVETLRAKFPHLN--- 181
             A  A  P TS++ L    P  D+ ++M+V PGF GQ F+ + + K+   R     L    
Sbjct:   115 AGLAFSPDTSIEFLPSFLPFCDVVVLMSVYPGFTGQSFLPNTIEKIAFARHAIKTLGLKD 174

Query:   182 ---IQVDGGLGKETIPKAAKAGANVIVAGTSVFTA 213
                I+VDGG+ +++ P    AGA+++V  + +F A
Sbjct:   175 SCLIEVDGGIDQQSAPLCRDAGADILVTASYLFEA 209


^ = swiss|Q58093|RPE_METJA Ribulose-phosphate 3-epimerase (EC 5.1.3.1)
            (Pentose-5-phosphate 3- epimerase) (PPE) (R5P3E).
            Length = 234

                        0         50        100        150       200       
                        |          |          |          |         |       |234
swiss|Q58093|RPE_METJ  | __________________________________________________
Local hits (HSPs)      | _______________________________________________

 Score = 363 (132.8 bits), Expect = 8.4e-34, P = 8.4e-34
 Identities = 87/236 (36%), Positives = 129/236 (54%)

Query:     6 IAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSVPRPGD 65
             I  SIL++DF +L  E  K   AG D+ H+D+MDGHFVPNI++G  I   +++    P  
Sbjct:     4 IGASILSADFGHLREEIKKAEEAGVDFFHVDMMDGHFVPNISMGIGIAKHVKKLTELP-- 61

Query:    66 ASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDPLHLVKLIKSKGIKA 125
                         + H+MVEN + +V++F +   D  TFH EA + P  ++  IKS G K 
Sbjct:    62 -----------VEVHLMVENVDLFVNEFEEM--DYITFHIEAVKFPFRIINRIKSIGAKP 108

Query:   126 ACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQKFMEDMMPKVETLRAKFPH----LN 181
               A+ P T +D +  +   +   LVMTVEPGF GQKF+  M  K+  L++          
Sbjct:   109 IVALNPATPLDAIEYILGDVYAVLVMTVEPGFSGQKFIPVMTKKIRKLKSMIVENGYDTK 168

Query:   182 IQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHDVISFMKEEVSKELRSRDLL 237
             I VDGG+  ET P A KAGA+V+VA +++F   D    +  ++E   + L ++D L
Sbjct:   169 IFVDGGINVETAPLAVKAGADVLVAASAIFGKDDVKTAVKNLREAALEAL-NKDFL 223


^ = swiss|P45455|RPE_SERMA Ribulose-phosphate 3-epimerase (EC 5.1.3.1)
            (Pentose-5-phosphate 3- epimerase) (PPE) (R5P3E).
            Length = 210

                        0          50         100         150         200  
                        |           |           |           |           |  |210
swiss|P45455|RPE_SERM  | __________________________________________________
Local hits (HSPs)      | _________________________________________________

 Score = 362 (132.5 bits), Expect = 1.1e-33, P = 1.1e-33
 Identities = 84/219 (38%), Positives = 125/219 (57%)

Query:     1 MVKPIIAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSV 60
             M K +IAPSIL++DFA LG +   V+ AG D +H DVMD H+VPN+T+G  +  +LR   
Sbjct:     1 MKKFLIAPSILSADFARLGEDTANVLAAGGDVVHFDVMDNHYVPNLTIGPMVCEALRNY- 59

Query:    61 PRPGDASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDPLHLVKLIKS 120
                G         TA  D H+MV+  ++ V DFAK GA   +FH EA++     ++LIK 
Sbjct:    60 ---GI--------TAPIDVHLMVKPVDRIVPDFAKAGASYISFHPEASEHVDRTIQLIKE 108

Query:   121 KGIKAACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQKFMEDMMPKVETLRAKFPH- 179
              G KA     P T +  L  +   +D+ L+M+V PGFGGQ F+   + K+  +R      
Sbjct:   109 HGCKAGLVFNPATPLSYLDYVMDKIDVILLMSVNPGFGGQSFIHGTLDKLRQVRKLIDDS 168

Query:   180 ---LNIQVDGGLGKETIPKAAKAGANVIVAGTSVFTAAD 215
                + ++VDGG+  + I + A AGA++ VAG+++F   D
Sbjct:   169 GRDIRLEVDGGVKVDNIAEIAAAGADMFVAGSAIFGQPD 207


^ = swiss|P44756|RPE_HAEIN Ribulose-phosphate 3-epimerase (EC 5.1.3.1)
            (Pentose-5-phosphate 3- epimerase) (PPE) (R5P3E).
            Length = 224

                        0          50        100        150        200     
                        |           |          |          |          |     |224
swiss|P44756|RPE_HAEI  | __________________________________________________
Local hits (HSPs)      | _________________________________________________

 Score = 360 (131.8 bits), Expect = 1.7e-33, P = 1.7e-33
 Identities = 82/232 (35%), Positives = 133/232 (57%)

Query:     2 VKP-IIAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSV 60
             +KP +IAPSIL++D A LG +   V+NAGAD +H DVMD H+VPN+T G  +  +LR   
Sbjct:     1 MKPYLIAPSILSADLARLGDDVQNVLNAGADVIHFDVMDNHYVPNLTFGPAVCQALR--- 57

Query:    61 PRPGDASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDPLHLVKLIKS 120
                      +   TA  D H+MV+  ++ + DFAK GA+  TFH E+++     ++LI+ 
Sbjct:    58 ---------DYGITAPIDVHLMVKPVDRIIPDFAKAGANYITFHPESSEHIDRSLQLIRD 108

Query:   121 KGIKAACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQKFMEDMMPKVETLRAKFPH- 179
              G K+     P   +  L  +   +D+ L+M+V PGFGGQ F+   + K++  R      
Sbjct:   109 CGCKSGLVFNPAMPLSYLDYVLDKVDVVLLMSVNPGFGGQSFIPATLKKLQQARKIIDES 168

Query:   180 ---LNIQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHDVISFMKEEVS 228
                + ++VDGG+  + I + A AGA++ VAG+++F   D   VI  ++ +++
Sbjct:   169 GYDIRLEVDGGVKVDNIAEIAAAGADMFVAGSAIFGKPDYKQVIDQIRTQLA 220


^ = swiss|Q9PKR7|RPE_CHLMU Ribulose-phosphate 3-epimerase (EC 5.1.3.1)
            (Pentose-5-phosphate 3- epimerase) (PPE) (R5P3E).
            Length = 228

                        0         50        100        150        200      
                        |          |          |          |          |      |228
swiss|Q9PKR7|RPE_CHLM  | __________________________________________________
Local hits (HSPs)      |  ______________________________________________

 Score = 359 (131.4 bits), Expect = 2.2e-33, P = 2.2e-33
 Identities = 84/229 (36%), Positives = 131/229 (57%)

Query:     5 IIAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSVPRPG 64
             +IAPSI+ +D A LG     +  +GA+ +HIDVMDGHFVPNIT G  I+ ++ RS     
Sbjct:     7 LIAPSIMGADLACLGDAARNIEESGANLIHIDVMDGHFVPNITFGPGIIAAINRS----- 61

Query:    65 DASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDPLHLVKLIKSKGIK 124
                 T+     F + H M+  P ++V+ F K GAD+   H+EA ++   ++  I+  G++
Sbjct:    62 ----TD----LFLEVHAMIYTPFEFVEAFVKAGADRIIVHFEAAENLKEILDYIRKCGVQ 113

Query:   125 AACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQKFMEDMMPKVETLRAKFPHLN--- 181
             A  A  P TS++ +    P  D+ L+M+V+PGF GQKF+ D + K+  +R     L    
Sbjct:   114 AGIAFSPETSIEFISAFIPLCDVILLMSVQPGFCGQKFIPDTIEKIRFVRQAIQTLGKEG 173

Query:   182 ---IQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHDVISFMKEEV 227
                I+VDGG+ +E+     +AGA+++VA +  F      D I+ MKE+V
Sbjct:   174 SCLIEVDGGIDEESARACREAGADILVAASYFFKK----DSIN-MKEKV 217


^ = swiss|P40117|RPEC_ALCEU Ribulose-phosphate 3-epimerase, chromosomal (EC
            5.1.3.1) (Pentose-5- phosphate 3-epimerase) (PPE) (R5P3E).
            Length = 241

                        0         50        100       150       200        
                        |          |          |         |         |        |241
swiss|P40117|RPEC_ALC  | __________________________________________________
Local hits (HSPs)      |     __________________________________________

 Score = 340 (124.7 bits), Expect = 2.3e-31, P = 2.3e-31
 Identities = 81/218 (37%), Positives = 120/218 (55%)

Query:     6 IAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSVPRPGD 65
             +APSIL++DFA LG E   +   GAD +H DVMD H+VPN+T+G  +  ++R  V  P  
Sbjct:    18 LAPSILSADFARLGEEVCAIEAGGADLVHFDVMDNHYVPNLTIGPLVCEAIRPLVSIP-- 75

Query:    66 ASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDPLHLVKLIKSKGIKA 125
                         D H+MVE  +  +  FAK GA+  +FH EA++     + LI+  G KA
Sbjct:    76 -----------IDVHLMVEPVDALIPLFAKAGANIISFHPEASRHVDRTIGLIRDHGCKA 124

Query:   126 ACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQKFMEDMMPKVETLRAKFPH------ 179
                + P T +  L      LD+ L+M+V PGFGGQ F+  ++ KV   RA+         
Sbjct:   125 GLVLNPATPLGWLDHTLDQLDLVLLMSVNPGFGGQAFIPGVLDKVRQARARIDRQVDAGG 184

Query:   180 --LNIQVDGGLGKETIPKAAKAGANVIVAGTSVFTAAD 215
               + +++DGG+  + I   A+AGA+  VAG++VF A D
Sbjct:   185 RPVWLEIDGGVKADNIAAIARAGADTFVAGSAVFGAPD 222


^ = swiss|Q04539|RPEP_ALCEU Ribulose-phosphate 3-epimerase, plasmid (EC 5.1.3.1)
            (Pentose-5- phosphate 3-epimerase) (PPE) (R5P3E).
            Length = 241

                        0         50        100       150       200        
                        |          |          |         |         |        |241
swiss|Q04539|RPEP_ALC  | __________________________________________________
Local hits (HSPs)      |     __________________________________________

 Score = 336 (123.3 bits), Expect = 6.1e-31, P = 6.1e-31
 Identities = 80/218 (36%), Positives = 120/218 (55%)

Query:     6 IAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSVPRPGD 65
             +APSIL++DFA LG E   +   GAD +H DVMD H+V N+T+G  +  ++R  V  P  
Sbjct:    18 LAPSILSADFARLGEEVCAIEAGGADLVHFDVMDNHYVSNLTIGPLVCEAIRPLVSIP-- 75

Query:    66 ASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDPLHLVKLIKSKGIKA 125
                         D H+MVE  +  +  FAK GA+  +FH EA++     + LI+  G KA
Sbjct:    76 -----------IDVHLMVEPVDALIPMFAKAGANLISFHPEASRHVDRTIGLIRDHGCKA 124

Query:   126 ACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQKFMEDMMPKVETLRAKFPH------ 179
                + P T +  L      LD+ L+M+V PGFGGQ F+  ++ KV   RA+         
Sbjct:   125 GLVLNPATPLSWLDHTLDKLDLVLLMSVNPGFGGQAFIPGVLDKVRQARARIDRQVAAGG 184

Query:   180 --LNIQVDGGLGKETIPKAAKAGANVIVAGTSVFTAAD 215
               + +++DGG+  + I + A+AGA+  VAG++VF A D
Sbjct:   185 RPVWLEIDGGVKADNITEIARAGADTFVAGSAVFGAPD 222


^ = swiss|P51013|RPE_RHORU Ribulose-phosphate 3-epimerase (EC 5.1.3.1)
            (Pentose-5-phosphate 3- epimerase) (PPE) (R5P3E).
            Length = 225

                        0          50        100        150        200     
                        |           |          |          |          |     |225
swiss|P51013|RPE_RHOR  | __________________________________________________
Local hits (HSPs)      | ________________________________________________

 Score = 331 (121.6 bits), Expect = 2.1e-30, P = 2.1e-30
 Identities = 80/228 (35%), Positives = 124/228 (54%)

Query:     1 MVKPI-IAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRS 59
             M + I IAPS+L++DFA     C      GAD LH DVMD H+VPN+T+G  +  +LR  
Sbjct:     1 MTRAIRIAPSLLSADFAISRPRCPSDGRTGADILHFDVMDNHYVPNLTVGPLVCAALRPH 60

Query:    60 VPRPGDASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDPLHL-VKLI 118
                P              D H+M    +  +D FA+ GAD  TFH EA+ D +H  V++I
Sbjct:    61 TSLP-------------IDVHLMTRPVDPLIDSFAEAGADMITFHPEAS-DHVHRSVQMI 106

Query:   119 KSKGIKAACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQKFMEDMMPKVETLR--AK 176
             + +G+KA  A+ P + + +L  +   LD+ L+M+V PGFGGQ F+   +PK+  L    +
Sbjct:   107 RKRGLKAGVALNPASPLSLLDHILEDLDLVLIMSVNPGFGGQSFIPSALPKIAALANGRR 166

Query:   177 FPHLNIQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHDVISFMK 224
                   +VDGG+        A+ GA+++V   ++F A+D    I+ ++
Sbjct:   167 RACRGDRVDGGVNPADARALARPGADILVR-LAIFGASDRAKAIASIR 213


^ = swiss|Q9ZJ75|RPE_HELPJ Ribulose-phosphate 3-epimerase (EC 5.1.3.1)
            (Pentose-5-phosphate 3- epimerase) (PPE) (R5P3E).
            Length = 217

                        0          50         100         150        200   
                        |           |           |           |          |   |217
swiss|Q9ZJ75|RPE_HELP  | __________________________________________________
Local hits (HSPs)      | ______________________________________________

 Score = 322 (118.4 bits), Expect = 1.9e-29, P = 1.9e-29
 Identities = 75/214 (35%), Positives = 124/214 (57%)

Query:     6 IAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSVPRPGD 65
             +APS+L++DF +L  E   V NA  D+LH+DVMDGH+VPN+T+G P++           +
Sbjct:     3 VAPSLLSADFMHLAKEIESVSNA--DFLHVDVMDGHYVPNLTMG-PVILE---------N 50

Query:    66 ASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDPLHLVKLIKSKGIKA 125
              +   + P    D H+MVEN   +V+ FA       + H E  + P  +++LIKS GI  
Sbjct:    51 VTQMSQVP---LDVHLMVENASFFVELFAPLNPQIISIHAENEKHPHRVLQLIKSSGITP 107

Query:   126 ACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQKFMEDMMPK---VETLRAKF-PHLN 181
                + P T  + +  L   + + L+M+V PGFGGQKF++ ++ K   V+ L  ++ P   
Sbjct:   108 GIVLNPHTHEESIKYLLESVGLVLLMSVNPGFGGQKFLDLVLEKCLKVKELIKRYNPSCL 167

Query:   182 IQVDGGLGKETIPKAAKAGANVIVAGTSVFTAAD 215
             ++VDGG+  + I +  +AG +V+V+G+ +F + D
Sbjct:   168 LEVDGGVNDKNIFELQQAGVDVVVSGSYIFESKD 201


^ = swiss|P56188|RPE_HELPY Ribulose-phosphate 3-epimerase (EC 5.1.3.1)
            (Pentose-5-phosphate 3- epimerase) (PPE) (R5P3E).
            Length = 217

                        0          50         100         150        200   
                        |           |           |           |          |   |217
swiss|P56188|RPE_HELP  | __________________________________________________
Local hits (HSPs)      | ______________________________________________

 Score = 312 (114.9 bits), Expect = 2.1e-28, P = 2.1e-28
 Identities = 74/214 (34%), Positives = 123/214 (57%)

Query:     6 IAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSVPRPGD 65
             +APS+L++DF +L  E   V NA  D+LH+DVMDGH+VPN+T+G P+V           +
Sbjct:     3 VAPSLLSADFMHLAKEIESVSNA--DFLHVDVMDGHYVPNLTMG-PVVLE---------N 50

Query:    66 ASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDPLHLVKLIKSKGIKA 125
              +   + P    D H+MVEN   + + FA       + H E  + P  +++LIK+ GI  
Sbjct:    51 VTQMSQVP---LDVHLMVENASFFAELFAPLKPQIISIHAENEKHPHRVLQLIKNLGITP 107

Query:   126 ACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQKFMEDMMPK---VETLRAKF-PHLN 181
                + P T  + +  L   + + L+M+V PGFGGQKF++ ++ K   V+ L  ++ P   
Sbjct:   108 GIVLNPHTHEESIKYLLESVGLVLLMSVNPGFGGQKFLDLVLEKCLKVKELIKRYNPSCL 167

Query:   182 IQVDGGLGKETIPKAAKAGANVIVAGTSVFTAAD 215
             ++VDGG+  + I +  +AG +V+V+G+ +F + D
Sbjct:   168 LEVDGGVNDKNIFELQQAGVDVVVSGSYIFKSKD 201


^ = swiss|P32719|ALSE_ECOLI D-allulose-6-phosphate 3-epimerase (EC 5.1.3.-).
            Length = 231

                        0         50        100        150        200      
                        |          |          |          |          |      |231
swiss|P32719|ALSE_ECO  | __________________________________________________
Local hits (HSPs)      | ____________________________________________

 Score = 296 (109.3 bits), Expect = 1.1e-26, P = 1.1e-26
 Identities = 73/219 (33%), Positives = 111/219 (50%)

Query:     6 IAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSVPRPGD 65
             I+PS++  D      E  + I++ AD+ HID+MDGHFVPN+TL    V+ +++   +P  
Sbjct:     3 ISPSLMCMDLLKFK-EQIEFIDSHADYFHIDIMDGHFVPNLTLSPFFVSQVKKLATKP-- 59

Query:    66 ASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQ-DPLHLVKLIKSKGIK 124
                         DCH+MV  P+ ++   A+ GAD  T H E        L+  I+   +K
Sbjct:    60 -----------LDCHLMVTRPQDYIAQLARAGADFITLHPETINGQAFRLIDEIRRHDMK 108

Query:   125 AACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQKFMEDMMPKVETLRA----KFPHL 180
                 + P T V+ +       D   VMTV+PGF GQ F+ +M+ K+  L+A    +    
Sbjct:   109 VGLILNPETPVEAMKYYIHKADKITVMTVDPGFAGQPFIPEMLDKLAELKAWREREGLEY 168

Query:   181 NIQVDGGLGKETIPKAAKAGANVIVAGTS-VFTAADPHD 218
              I+VDG   + T  K   AGA+V + GTS +F  A+  D
Sbjct:   169 EIEVDGSCNQATYEKLMAAGADVFIVGTSGLFNHAENID 207


^ = swiss|P39362|SGCE_ECOLI Protein sgcE (EC 5.1.3.-).
            Length = 210

                        0          50         100         150         200  
                        |           |           |           |           |  |210
swiss|P39362|SGCE_ECO  | __________________________________________________
Local hits (HSPs)      | ______________________________________________

 Score = 249 (92.7 bits), Expect = 1.0e-21, P = 1.0e-21
 Identities = 62/211 (29%), Positives = 98/211 (46%)

Query:     5 IIAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSVPRPG 64
             I+ PS+ +++  + G E   + N     LH+D+ D  F+ NIT G   V ++ R  P P 
Sbjct:     2 ILHPSLASANPLHYGRELTALDNLDFGSLHLDIEDSSFINNITFGMKTVQAVARQTPHP- 60

Query:    65 DASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDPLHLVKLIKSKGIK 124
                       +F   H M+  P++W +  A+        H E    P   +  I+  G +
Sbjct:    61 ---------LSF---HFMLARPQRWFNALAEIRPAWIFVHAETLDYPSETLTEIRHTGAR 108

Query:   125 AACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQKFMEDMMPKVETLRAKFPHLNIQV 184
             A     P T +D    LA  LD  +VMT EP   GQ+F+  M  K++ +R  FP      
Sbjct:   109 AGLVFNPATPIDAWRYLASELDGVMVMTSEPDGQGQRFIPSMCEKIQKVRTAFPQTECWA 168

Query:   185 DGGLGKETIPKAAKAGANVIVAGTSVFTAAD 215
             DGG+      + A AGA  +V G ++F+++D
Sbjct:   169 DGGITLAAAQQLAAAGAQHMVIGRALFSSSD 199


^ = swiss|P75522|RPE_MYCPN Probable ribulose-phosphate 3-epimerase (EC 5.1.3.1)
            (Pentose-5- phosphate 3-epimerase) (PPE) (R5P3E).
            Length = 215

                        0          50         100         150        200   
                        |           |           |           |          |   |215
swiss|P75522|RPE_MYCP  | __________________________________________________
Local hits (HSPs)      |         ______________________________________

 Score = 122 (48.0 bits), Expect = 3.1e-06, P = 3.1e-06
 Identities = 55/185 (29%), Positives = 86/185 (46%)

Query:    29 GADWLHIDVMDGHFVPNITLGQPIVTSLRRSVPRPGDASNTEKKPTAF-FDCHMMVENPE 87
             G   +H DVMD HFV N T+ Q             G+  + E +   F  + H+MV+  E
Sbjct:    33 GLRLIHYDVMD-HFVDN-TVFQ-------------GEHLD-ELQQIGFQVNVHLMVQALE 76

Query:    88 KWVDDFAKCGA-DQFTFHYEATQDPL--HLVKLIKSKGIKAACAIKPGTSVDVLFE-LAP 143
             + +  +    A  + +FH E    P   H +  IK  G +   A K  T + V +E L  
Sbjct:    77 QILPVYLHHQAVKRISFHVEPFDIPTIKHFIAQIKQAGKQVGLAFKFTTPL-VNYERLVQ 135

Query:   144 HLDMALVMTVEPGFGGQKFMEDMMPKVETLRAKFPHLNIQVDGGLGKETIPKAAKAGANV 203
              LD   +M+V PG GGQ F   +   ++    K+ H +I++DGG+  + I +  +   N 
Sbjct:   136 QLDFVTLMSVPPGKGGQAFNSAVFNNLKQAH-KY-HCSIEIDGGIKLDNIHQI-QDDVNF 192

Query:   204 IVAGT 208
             IV G+
Sbjct:   193 IVMGS 197


^ = swiss|P47358|RPE_MYCGE Probable ribulose-phosphate 3-epimerase (EC 5.1.3.1)
            (Pentose-5- phosphate 3-epimerase) (PPE) (R5P3E).
            Length = 209

                        0          50         100         150         200  
                        |           |           |           |           |  |209
swiss|P47358|RPE_MYCG  | __________________________________________________
Local hits (HSPs)      |             _________________________________

 Score = 118 (46.6 bits), Expect = 8.8e-06, P = 8.8e-06
 Identities = 39/143 (27%), Positives = 69/143 (48%)

Query:    70 EKKPTAF-FDCHMMVENPEKWVDDF-AKCGADQFTFHYE--ATQDPLHLVKLIKSKGIKA 125
             E K   F  + H+MVE     ++ + ++    + +FH E  +      L++L+K  G + 
Sbjct:    53 ELKTIGFDVNVHLMVEQIIPQINFYLSQPNVKRISFHVEPFSFAKIKELIQLVKENGKEV 112

Query:   126 ACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQKFMEDMMPKVETLRAKFPHLNIQVD 185
               A K  T++ +       +D   +M+V PG GGQ F E +   ++   A   +L I++D
Sbjct:   113 GLAFKFTTNLQLYQPFFTTIDFITLMSVPPGKGGQAFNEAVFTNLKI--ANHYNLKIEID 170

Query:   186 GGLGKETIPKAAKAGANVIVAGT 208
             GG+    I +  KA  + IV G+
Sbjct:   171 GGIKVNNIDQI-KAFVDFIVMGS 192


^ = swiss|Q48907|HUMS_METAM Hexulose-6-phosphate synthase (EC 4.1.2.-) (HUMPS)
            (D-arabino 3- hexulose 6-phosphate formaldehyde lyase).
            Length = 208

                        0           50         100         150         200 
                        |            |           |           |           | |208
swiss|Q48907|HUMS_MET  | __________________________________________________
Local hits (HSPs)      |                                        ________

 Score = 85 (35.0 bits), Expect = 0.081, P = 0.078
 Identities = 16/37 (43%), Positives = 24/37 (64%)

Query:   180 LNIQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADP 216
             L + V GG+   T+ +   AGA +IVAG +++ AADP
Sbjct:   160 LEVSVAGGVKPATVAQVKDAGATIIVAGAAIYGAADP 196


^ = swiss|Q8U1U1|PYRF_PYRFU Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
            (OMP decarboxylase) (OMPDCase) (OMPdecase).
            Length = 211

                        0          50         100         150         200  
                        |           |           |           |           |  |211
swiss|Q8U1U1|PYRF_PYR  | __________________________________________________
Local hits (HSPs)      |             _____________________________________

 Score = 70 (29.7 bits), Expect = 0.81, Sum P(2) = 0.55
 Identities = 42/145 (28%), Positives = 67/145 (46%)

Query:    97 GADQFTFHYEATQDPLHLVKLIKSKG--IKAACAIKPGTSVDVLFELAPH-LDMALVMTV 153
             GAD    H    +D    VK +K  G  I       PG +++ +  L    +DMA    +
Sbjct:    78 GADYIILHSFVGRDS---VKAVKELGEIIMIVEMSHPG-ALEFINPLTDKFIDMA--NEI 131

Query:   154 EPGFGGQKFMEDMMP-KVETLRAKFPHLNIQV-DGGLGKET-IP-KAAKAGANVIVAGTS 209
             +P FG         P ++  +R +    +I+V   G+G +   P +A KAGA+ I+ G +
Sbjct:   132 KP-FG--VIAPGTRPERIRYIRERLSK-DIKVLTPGIGAQGGSPVEALKAGADYIIIGRA 187

Query:   210 VFTAADPHDVISFMKEEVSKELRSR 234
             ++ A  P +    + EEV KE  SR
Sbjct:   188 IYNAERPREAAKKIFEEV-KEWSSR 211

 Score = 41 (19.5 bits), Expect = 0.81, Sum P(2) = 0.55
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query:     4 PIIAPSILASDFANLG-CECHKVINAGADWL 33
             PIIA   LA D  N       KV +AGAD++
Sbjct:    53 PIIADLKLA-DIPNTNRLIAKKVYDAGADYI 82


^ = swiss|O74110|PYRF_THEAC Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
            (OMP decarboxylase) (OMPDCase) (OMPdecase).
            Length = 214

                        0          50         100         150        200   
                        |           |           |           |          |   |214
swiss|O74110|PYRF_THE  | __________________________________________________
Local hits (HSPs)      |                                        __________

 Score = 76 (31.8 bits), Expect = 0.96, P = 0.62
 Identities = 15/45 (33%), Positives = 27/45 (60%)

Query:   187 GLGKE--TIPKAAKAGANVIVAGTSVFTAADPHDVISFMKEEVSK 229
             G+G +      A KAGA++++ G S++ +ADP      + EE++K
Sbjct:   165 GIGSQGGRASDAIKAGADLVIVGRSIYESADPVTAAEAINEEIAK 209


^ = swiss|Q98AZ6|THIG_RHILO Thiazole biosynthesis protein thiG.
            Length = 257

                        0          60         120         180        240   
                        |           |           |           |          |   |257
swiss|Q98AZ6|THIG_RHI  | __________________________________________________
Local hits (HSPs)      |                                  ______________

 Score = 75 (31.5 bits), Expect = 1.7, P = 0.83
 Identities = 22/75 (29%), Positives = 39/75 (52%)

Query:   167 MPKVETLRAKFPHLNIQVDGGLGKET-IPKAAKAGANVIVAGTSVFTAADPHDVI-SFMK 224
             M  + ++R  FP + + VD GLG+ +      + G + ++  T+V  AADP  +  +F K
Sbjct:   165 MTALRSMRGHFPDVPLIVDAGLGRPSHAATVMELGFDAVLLNTAVARAADPVGMARAFGK 224

Query:   225 E-EVSKELRSRDLLD 238
               +  +E  S  LL+
Sbjct:   225 AVDAGREAFSSGLLE 239


^ = swiss|Q8PV88|PYRF_METMA Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
            (OMP decarboxylase) (OMPDCase) (OMPdecase).
            Length = 220

                        0          50         100        150        200    
                        |           |           |          |          |    |220
swiss|Q8PV88|PYRF_MET  | __________________________________________________
Local hits (HSPs)      |              ______            ___________________

 Score = 69 (29.3 bits), Expect = 1.9, Sum P(2) = 0.85
 Identities = 25/88 (28%), Positives = 41/88 (46%)

Query:   151 MTVEPGFGGQKFMEDMMPKVETLRAKF-PHLNIQVDGGLGKETIPKAA---KAGANVIVA 206
             M VE G  G         +V+ +R      L I +  G+G +   KA+    AGA+ ++ 
Sbjct:   135 MAVEAGAFGLVAPATRPERVKEIRKIIGDRLTI-ISPGVGAQG-GKASDVISAGADWVIV 192

Query:   207 GTSVFTAADPHDVISFMKEEVSKELRSR 234
             G S++ A  P +    + EE+  ELR +
Sbjct:   193 GRSIYKAESPKEAACEIAEEIQAELRGK 220

 Score = 39 (18.8 bits), Expect = 1.9, Sum P(2) = 0.85
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query:     4 PIIAPSILASDFANLG-CECHKVINAGAD 31
             P+IA   +A D  N     C +V  AGAD
Sbjct:    56 PVIADFKVA-DIPNTNRLICEQVFKAGAD 83


^ = swiss|P58264|THIG_RHIME Thiazole biosynthesis protein thiG.
            Length = 257

                        0          60         120         180        240   
                        |           |           |           |          |   |257
swiss|P58264|THIG_RHI  | __________________________________________________
Local hits (HSPs)      |                   __             _________

 Score = 71 (30.1 bits), Expect = 2.3, Sum P(2) = 0.89
 Identities = 15/48 (31%), Positives = 28/48 (58%)

Query:   170 VETLRAKFPHLNIQVDGGLGKET-IPKAAKAGANVIVAGTSVFTAADP 216
             +  +RA+FP + + VD G+G+ +      + G + ++  T+V  AADP
Sbjct:   168 LRAMRAEFPDVPLIVDAGIGRPSHATTVMELGYDAVLLNTAVAGAADP 215

 Score = 38 (18.4 bits), Expect = 2.3, Sum P(2) = 0.89
 Identities = 6/13 (46%), Positives = 10/13 (76%)

Query:    29 GADWLHIDVMDGH 41
             G DW+ ++V+ GH
Sbjct:    91 GTDWIKLEVI-GH 102


^ = swiss|P30139|THIG_ECOLI Thiazole biosynthesis protein thiG.
            Length = 256

                        0          60         120         180        240   
                        |           |           |           |          |   |256
swiss|P30139|THIG_ECO  | __________________________________________________
Local hits (HSPs)      |                       ________________________

 Score = 73 (30.8 bits), Expect = 2.9, P = 0.95
 Identities = 29/128 (22%), Positives = 58/128 (45%)

Query:   110 DPLHLVKLIKSKGIKAACAIKPGTSVD-VLFELAPHLDMALVMTVEPGFGGQKFMEDM-M 167
             DP+  +K  ++  ++    + P    D VL +    +  A VM +    G  + +E   M
Sbjct:   108 DPIETLKAAETL-VQQGFVVLPYCGADPVLCKRLEEVGCAAVMPLGAPIGSNQGLETRAM 166

Query:   168 PKVETLRAKFPHLNIQVDGGLGKET-IPKAAKAGANVIVAGTSVFTAADPHDVISFMKEE 226
              ++   +A  P   + VD G+G  +   +A + GA+ ++  T++  A DP ++    +  
Sbjct:   167 LEIIIQQATVP---VVVDAGIGVPSHAAQALEMGADAVLVNTAIAVADDPVNMAKAFRLA 223

Query:   227 VSKELRSR 234
             V   L +R
Sbjct:   224 VEAGLLAR 231


^ = swiss|P42405|HUMS_BACSU Probable hexulose-6-phosphate synthase (EC 4.1.2.-)
            (HUMPS) (D-arabino 3-hexulose 6-phosphate formaldehyde lyase).
            Length = 210

                        0          50         100         150         200  
                        |           |           |           |           |  |210
swiss|P42405|HUMS_BAC  | __________________________________________________
Local hits (HSPs)      |                                _________________

 Score = 71 (30.1 bits), Expect = 3.5, P = 0.97
 Identities = 15/73 (20%), Positives = 37/73 (50%)

Query:   153 VEPGFGGQKFMEDMMPKVETLRAKFPHLNIQVDGGLGKETIPKAAKAGANVIVAGTSVFT 212
             V  G+  Q   ++   ++ T++    +    + GG+  +T+P+  +   ++++ G  + +
Sbjct:   133 VHTGYDLQAEGKNSFEELTTIKNTVKNAKTAIAGGIKLDTLPEVIQQKPDLVIVGGGITS 192

Query:   213 AADPHDVISFMKE 225
             AAD  +  S MK+
Sbjct:   193 AADKAETASKMKQ 205


^ = swiss|Q15274|NADC_HUMAN Nicotinate-nucleotide pyrophosphorylase
            [carboxylating] (EC 2.4.2.19) (Quinolinate
            phosphoribosyltransferase [decarboxylating]) (QAPRTase) (QPRTase).
            Length = 297

                        0         60       120       180       240         
                        |          |         |         |         |         |297
swiss|Q15274|NADC_HUM  | __________________________________________________
Local hits (HSPs)      |                                        __________

 Score = 73 (30.8 bits), Expect = 3.7, P = 0.98
 Identities = 17/68 (25%), Positives = 35/68 (51%)

Query:   164 EDMMPKVETLRAKFPHLNIQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHDVISFM 223
             E++ P    L+A+FP + ++  GG+  + +P+    G ++ V    + T A P   + F 
Sbjct:   227 EELHPTATVLKAQFPSVAVEASGGITLDNLPQFC--GPHIDVISMGMLTQAAP--ALDFS 282

Query:   224 KEEVSKEL 231
              +  +KE+
Sbjct:   283 LKLFAKEV 290


^ = swiss|P23474|RUBR_CLOST Rubredoxin (Rd).
            Length = 53

                        0        10        20        30       40       50  
                        |         |         |         |        |        |  |53
swiss|P23474|RUBR_CLO  | __________________________________________________
Local hits (HSPs)      |                ________________________________

 Score = 52 (23.4 bits), Expect = 3.8, P = 0.98
 Identities = 15/41 (36%), Positives = 16/41 (39%)

Query:    61 PRPGDASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQF 101
             P  GD  N     T+F D       PE WV      G DQF
Sbjct:    15 PEVGDPDNNINPGTSFQDI------PEDWVCPLCGVGKDQF 49


^ = swiss|Q9UZ35|PYRF_PYRAB Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
            (OMP decarboxylase) (OMPDCase) (OMPdecase).
            Length = 208

                        0           50         100         150         200 
                        |            |           |           |           | |208
swiss|Q9UZ35|PYRF_PYR  | __________________________________________________
Local hits (HSPs)      |                        ___________________________

 Score = 70 (29.7 bits), Expect = 4.5, P = 0.99
 Identities = 31/127 (24%), Positives = 58/127 (45%)

Query:   106 EATQDPLHLVKLIKSKGIKAACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQ--KFM 163
             EA  +   ++ +++     A   I P T  D   ELA   D+     + PG   +  K++
Sbjct:    94 EAVNELGEIILVVEMSHPGALEFINPLT--DKFIELAN--DVEPFGVIAPGTRPERVKYI 149

Query:   164 EDMMPKVETLRAKFPHLNIQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHDVISFM 223
              + +   E ++   P +  Q  GG  KE I    +AGA+ ++ G S++ A +P +    +
Sbjct:   150 RERLK--EGVKILTPGIGAQ--GGKAKEAI----EAGADYVIVGRSIYNAPNPREAAREI 201

Query:   224 KEEVSKE 230
              +E+  E
Sbjct:   202 YDEIRGE 208


^ = swiss|O58462|PYRF_PYRHO Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
            (OMP decarboxylase) (OMPDCase) (OMPdecase).
            Length = 208

                        0           50         100         150         200 
                        |            |           |           |           | |208
swiss|O58462|PYRF_PYR  | __________________________________________________
Local hits (HSPs)      |              ________       _____________________

 Score = 67 (28.6 bits), Expect = 5.3, Sum P(2) = 0.99
 Identities = 26/101 (25%), Positives = 49/101 (48%)

Query:   129 IKPGTSVDVLFELAPHLDMALVMTVEPGFGGQK--FMEDMMPKVETLRAKFPHLNIQVDG 186
             I P T  D   E+A  ++   V  + PG   ++  ++ D +   E ++   P +  Q  G
Sbjct:   117 INPLT--DRFIEVANEIEPFGV--IAPGTRPERIGYIRDRLK--EGIKILAPGIGAQ--G 168

Query:   187 GLGKETIPKAAKAGANVIVAGTSVFTAADPHDVISFMKEEV 227
             G  K+    A KAGA+ I+ G +++ A +P +    + +E+
Sbjct:   169 GKAKD----AVKAGADYIIVGRAIYNAPNPREAAKAIYDEI 205

 Score = 36 (17.7 bits), Expect = 5.3, Sum P(2) = 0.99
 Identities = 14/37 (37%), Positives = 17/37 (45%)

Query:     5 IIAPSILASDFANLG-CECHKVINAGADWLHIDVMDG 40
             IIA   LA D  N       KV  AGAD++ +    G
Sbjct:    54 IIADLKLA-DIPNTNRLIARKVFGAGADYVIVHTFVG 89


^ = swiss|Q91X91|NADC_MOUSE Nicotinate-nucleotide pyrophosphorylase
            [carboxylating] (EC 2.4.2.19) (Quinolinate
            phosphoribosyltransferase [decarboxylating]) (QAPRTase) (QPRTase).
            Length = 299

                        0         60       120       180       240         
                        |          |         |         |         |         |299
swiss|Q91X91|NADC_MOU  | __________________________________________________
Local hits (HSPs)      |                                       ________

 Score = 71 (30.1 bits), Expect = 6.3, P = 1.0
 Identities = 14/53 (26%), Positives = 29/53 (54%)

Query:   164 EDMMPKVETLRAKFPHLNIQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADP 216
             E++ P   TL+A+FP ++++  GG+  + + +    G ++ V    + T A P
Sbjct:   227 EELHPTAATLKARFPSVSVEASGGVTLDNLTQFC--GTHIDVISLGMLTQAAP 277


^ = swiss|Q8TS37|PYRF_METAC Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
            (OMP decarboxylase) (OMPDCase) (OMPdecase).
            Length = 221

                        0          50         100        150        200    
                        |           |           |          |          |    |221
swiss|Q8TS37|PYRF_MET  | __________________________________________________
Local hits (HSPs)      |              ______                     __________

 Score = 65 (27.9 bits), Expect = 6.8, Sum P(2) = 1.0
 Identities = 15/51 (29%), Positives = 25/51 (49%)

Query:   182 IQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHDVISFMKEEVSKELR 232
             +   GG   + I     AGA+ ++ G S++ A  P +    + EE+  ELR
Sbjct:   172 VGAQGGKASDVIA----AGADWVIVGRSIYKAESPKEAARQIAEEIQAELR 218

 Score = 38 (18.4 bits), Expect = 6.8, Sum P(2) = 1.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query:     4 PIIAPSILASDFANLG-CECHKVINAGAD 31
             P+IA   +A D  N     C +V  AGAD
Sbjct:    56 PVIADFKVA-DIPNTNRLICDQVFEAGAD 83


^ = swiss|P44506|YGGS_HAEIN Protein HI0090.
            Length = 237

                        0         50        100        150       200       
                        |          |          |          |         |       |237
swiss|P44506|YGGS_HAE  | __________________________________________________
Local hits (HSPs)      |                      ___________________________

 Score = 69 (29.3 bits), Expect = 7.4, P = 1.0
 Identities = 34/135 (25%), Positives = 60/135 (44%)

Query:    89 WVD--DFAKCGADQFTFHYEATQDPLHLVKLIKSKGIKAACAIKPGTSVDVL--FELAPH 144
             W+   D AK  AD+        + PL+++  I     ++   I+P   + +    E  PH
Sbjct:    97 WMQTLDRAKI-ADRLNEQRPTNKAPLNVLIQINISDEESKSGIQPEEMLTLAKHIENLPH 155

Query:   145 LDMALVMTVE-P--GFGGQK-FMEDMMPKVETLRAKFPHLNIQVDG-GLGK-ETIPKAAK 198
             L +  +M +  P      Q+     M+   E L+   P  N Q+D   +G  + +P A K
Sbjct:   156 LCLRGLMAIPAPTDNIAEQENAFRKMLELFEQLKQVLP--NQQIDTLSMGMTDDMPSAIK 213

Query:   199 AGANVIVAGTSVFTA 213
              G+ ++  GT++F A
Sbjct:   214 CGSTMVRIGTAIFGA 228


^ = swiss|O31139|HIS6_CORGL Imidazole glycerol phosphate synthase subunit hisF (EC
            4.1.3.-) (IGP synthase cyclase subunit) (IGP synthase subunit hisF)
            (ImGP synthase subunit hisF) (IGPS subunit hisF).
            Length = 258

                        0          60         120         180        240   
                        |           |           |           |          |   |258
swiss|O31139|HIS6_COR  | __________________________________________________
Local hits (HSPs)      |                  _______              _______

 Score = 61 (26.5 bits), Expect = 7.8, Sum P(2) = 1.0
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query:   170 VETLRAKFPHLNIQVDGGLGK-ETIPKAAKAGANVIVAGT 208
             +E +RA    + +   GG GK E  P A  AGAN ++A T
Sbjct:   195 LEKVRAAVS-IPVIASGGAGKAEHFPPAVAAGANAVLAAT 233

 Score = 44 (20.5 bits), Expect = 7.8, Sum P(2) = 1.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)

Query:    87 EKWVDDFAKCGADQFTFHYEATQDPLHLVKLIKSKGIKAACAI 129
             E+ VD   + GAD+ + +  A   P  L +L K  G  A C +
Sbjct:    87 EEDVDQLLRAGADKVSVNTSAIARPELLSELSKRFG--AQCIV 127


^ = swiss|P52055|YPI1_VIBAL Hypothetical protein in pilT-proC intergenic region
            (ORF1).
            Length = 233

                        0         50        100        150       200       
                        |          |          |          |         |       |233
swiss|P52055|YPI1_VIB  | __________________________________________________
Local hits (HSPs)      |                               ____________________

 Score = 68 (29.0 bits), Expect = 9.3, P = 1.0
 Identities = 27/98 (27%), Positives = 46/98 (46%)

Query:   128 AIKPGTSVDVLFELA------PHLDMALVMTVEPGFGGQKFMEDMMPKV----ETLRAKF 177
             A K G +   +FELA      P+L +  +M++       +       K+    +TL A+F
Sbjct:   136 ASKSGVTEAEVFELAELISRLPNLTLRGLMSIPANVSDYESQLHEFQKLATLKQTLEAQF 195

Query:   178 PHLNIQVDGGLGKETIPKAAKAGANVIVAGTSVFTAAD 215
             P ++    G  G  T   A +AG+ ++  GT++F A D
Sbjct:   196 PEIDTLSMGMSGDMTA--AIEAGSTMVRIGTAIFGARD 231


Parameters:
  matrix=BLOSUM62
  E=10
  V=250
  B=250
  hspmax=10
  filter=none
  echofilter
  stats
  qtype
  qres

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.414    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +0      0      238       238       10.  72 3  11 22  0.20    33
                                                    32  0.22    36


Statistics:
  Query          Expected         Observed           HSPs       HSPs
  Frame  MatID  High Score       High Score       Reportable  Reported
   +0      0    65 (30.1 bits)  1251 (578.4 bits)      53         53

  Query         Neighborhd  Word      Excluded    Failed   Successful  Overlaps
  Frame  MatID   Words      Hits        Hits    Extensions Extensions  Excluded
   +0      0      5715    21618469     4604210    16979814    34445        25

  Database:  /dove2/data/db/swiss
    Title:  swiss Release 39.0 Mar.2003
    Release date:  38.0 Mar.2003
    Posted date:  11:19:02 PM MET Mar 5, 2003
    Last modified:  unknown
    First created:  unknown
    Format:  BLAST-1.4
  # of letters in database:  44,986,459
  # of sequences in database:  122,564
  # of database sequences satisfying E:  47
  No. of states in DFA:  562 (110 KB)
  Total size of DFA:  232 KB (256 KB)
  Time to generate neighborhood:  0.01u 0.01s 0.02t  Elapsed: 00:00:00
  No. of threads or processors used:  4
  Search cpu time:  34.91u 1.28s 36.19t  Elapsed: 00:00:20
  Total cpu time:  35.01u 1.45s 36.46t  Elapsed: 00:00:21
  Start:  Fri Jul  4 17:17:18 2003   End:  Fri Jul  4 17:17:39 2003

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