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BLASTP 2.2.16 [Mar-11-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman 
(1997), "Gapped BLAST and PSI-BLAST: a new generation of 
protein database search programs", Nucleic Acids Res. 25:3389-3402.

Reference:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei 
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and 
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST 
protein database searches with composition-based statistics 
and other refinements", Nucleic Acids Res. 29:2994-3005.

RID: 1174312830-8461-2250483754.BLASTQ4


Database: PDB protein database
           29,318 sequences; 6,548,585 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  RPE_YEAST
Length=238


Distribution of 17 Blast Hits on the Query Sequence



Distance tree of resultsNew  Related Structures

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|28373310|pdb|1H1Y|A  Chain A, The Structure Of The Cytosoli...   230    2e-61 Related structures
gi|58176834|pdb|1TQX|A  Chain A, Crystal Structure Of Pfal0091...   197    3e-51 Related structures
gi|93279627|pdb|2FLI|A  Chain A, The Crystal Structure Of D-Ri...   168    1e-42 Related structures
gi|52695843|pdb|1TQJ|A  Chain A, Crystal Structure Of D-Ribulo...   163    3e-41 Related structures
gi|4930130|pdb|1RPX|A  Chain A, D-Ribulose-5-Phosphate 3-Epime...   154    2e-38 Related structures
gi|62738756|pdb|1YTD|A  Chain A, Crystal Structure Of A Nicoti...  30.8    0.28  Related structures
gi|88192320|pdb|2B9M|Y  Chain Y, 30s Ribosomal Subunit, Trnas,...  27.3    3.7   Related structures
gi|3114279|pdb|1RYP|K  Chain K, Crystal Structure Of The 20s P...  27.3    3.9   Related structures
gi|49258320|pdb|1NKG|A  Chain A, Rhamnogalacturonan Lyase From As  26.9    4.1   Related structures
gi|49259080|pdb|1SO6|A  Chain A, Crystal Structure Of E112qH13...  26.6    5.4   Related structures
gi|49259078|pdb|1SO5|A  Chain A, Crystal Structure Of E112q Mu...  26.6    5.4   Related structures
gi|49259074|pdb|1SO3|A  Chain A, Crystal Structure Of H136a Mu...  26.6    5.5   Related structures
gi|49259076|pdb|1SO4|A  Chain A, Crystal Structure Of K64a Mut...  26.6    5.5   Related structures
gi|20664209|pdb|1KV8|A  Chain A, Crystal Structure Of 3-Keto-L...  26.6    5.5   Related structures
gi|66360429|pdb|1XBY|A  Chain A, Structure Of 3-Keto-L-Gulonat...  26.2    6.8   Related structures
gi|66360427|pdb|1XBX|A  Chain A, Structure Of 3-Keto-L-Gulonat...  26.2    7.1   Related structures
gi|39654994|pdb|1UQW|A  Chain A, Crystal Structure Of Ylib Pro...  26.2    8.1   Related structures
Alignments
>gi|28373310|pdb|1H1Y|A Related structures Chain A, The Structure Of The Cytosolic D-Ribulose-5-Phosphate 3-Epimerase From Rice Complexed With Sulfate gi|28373311|pdb|1H1Y|B Related structures Chain B, The Structure Of The Cytosolic D-Ribulose-5-Phosphate 3-Epimerase From Rice Complexed With Sulfate gi|28373312|pdb|1H1Z|A Related structures Chain A, The Structure Of The Cytosolic D-Ribulose-5-Phosphate 3-Epimerase From Rice Complexed With Sulfate And Zinc gi|28373313|pdb|1H1Z|B Related structures Chain B, The Structure Of The Cytosolic D-Ribulose-5-Phosphate 3-Epimerase From Rice Complexed With Sulfate And Zinc Length=228 Score = 230 bits (587), Expect = 2e-61, Method: Composition-based stats. Identities = 116/226 (51%), Positives = 157/226 (69%), Gaps = 17/226 (7%) Query 6 IAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSVPRPGD 65 IAPS+L+SDFANL E +++ GADWLH+D+MDGHFVPN+T+G P++ SLR Sbjct 9 IAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLR-------- 60 Query 66 ASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDPLH-LVKLIKSKGIK 124 K A+ DCH+MV NP +V+ AK GA FTFH E ++D L++ IK+KG++ Sbjct 61 -----KHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMR 115 Query 125 AACAIKPGTSVDVLFELAPH---LDMALVMTVEPGFGGQKFMEDMMPKVETLRAKFPHLN 181 +++PGT V+ +F L +++ LVMTVEPGFGGQKFM +MM KV LR K+P L+ Sbjct 116 PGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLD 175 Query 182 IQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHDVISFMKEEV 227 I+VDGGLG TI AA AGAN IVAG+S+F AA+P +VIS +++ V Sbjct 176 IEVDGGLGPSTIDVAASAGANCIVAGSSIFGAAEPGEVISALRKSV 221 >gi|58176834|pdb|1TQX|A Related structures Chain A, Crystal Structure Of Pfal009167 A Putative D-Ribulose 5- Phosphate 3-Epimerase From P.Falciparum gi|58176835|pdb|1TQX|B Related structures Chain B, Crystal Structure Of Pfal009167 A Putative D-Ribulose 5- Phosphate 3-Epimerase From P.Falciparum Length=227 Score = 197 bits (500), Expect = 3e-51, Method: Composition-based stats. Identities = 110/241 (45%), Positives = 146/241 (60%), Gaps = 26/241 (10%) Query 2 VKPIIAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSVP 61 +K IIAPS+LAS+ + L E ++ + GA+W+H+DVMD HFVPN++ G P++ +L++ Sbjct 4 LKAIIAPSVLASNISKLAEETQRMESLGAEWIHLDVMDMHFVPNLSFGPPVINNLKKYTK 63 Query 62 RPGDASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEA----TQDPLHLVKL 117 + FFD H+MVE PEK+V ++Q TFH+EA T+ + L K Sbjct 64 ------------SIFFDVHLMVEYPEKYVPLLKT--SNQLTFHFEALNEDTERCIQLAKE 109 Query 118 IKSKGIKAACAIKPGTSVDVLFELAPHLDM-----ALVMTVEPGFGGQKFMEDMMPKVET 172 I+ + +IKP T V +L P LD LVMTVEPGFGGQ FM DMM KV Sbjct 110 IRDNNLWCGISIKPKTDVQ---KLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSF 166 Query 173 LRAKFPHLNIQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHDVISFMKEEVSKELR 232 LR K+ +LNIQVDGGL ET +A GAN+IVAGTS+F A DP VI M+ V K L Sbjct 167 LRKKYKNLNIQVDGGLNIETTEISASHGANIIVAGTSIFNAEDPKYVIDTMRVSVQKYLN 226 Query 233 S 233 + Sbjct 227 N 227 >gi|93279627|pdb|2FLI|A Related structures Chain A, The Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase From Streptococus Pyogenes Complexed With D-Xylitol 5- Phosphate gi|93279628|pdb|2FLI|B Related structures Chain B, The Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase From Streptococus Pyogenes Complexed With D-Xylitol 5- Phosphate gi|93279629|pdb|2FLI|C Related structures Chain C, The Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase From Streptococus Pyogenes Complexed With D-Xylitol 5- Phosphate gi|93279630|pdb|2FLI|D Related structures Chain D, The Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase From Streptococus Pyogenes Complexed With D-Xylitol 5- Phosphate gi|93279631|pdb|2FLI|E Related structures Chain E, The Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase From Streptococus Pyogenes Complexed With D-Xylitol 5- Phosphate gi|93279632|pdb|2FLI|F Related structures Chain F, The Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase From Streptococus Pyogenes Complexed With D-Xylitol 5- Phosphate gi|93279633|pdb|2FLI|G Related structures Chain G, The Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase From Streptococus Pyogenes Complexed With D-Xylitol 5- Phosphate gi|93279634|pdb|2FLI|H Related structures Chain H, The Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase From Streptococus Pyogenes Complexed With D-Xylitol 5- Phosphate gi|93279635|pdb|2FLI|I Related structures Chain I, The Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase From Streptococus Pyogenes Complexed With D-Xylitol 5- Phosphate gi|93279636|pdb|2FLI|J Related structures Chain J, The Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase From Streptococus Pyogenes Complexed With D-Xylitol 5- Phosphate gi|93279637|pdb|2FLI|K Related structures Chain K, The Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase From Streptococus Pyogenes Complexed With D-Xylitol 5- Phosphate gi|93279638|pdb|2FLI|L Related structures Chain L, The Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase From Streptococus Pyogenes Complexed With D-Xylitol 5- Phosphate Length=220 Score = 168 bits (425), Expect = 1e-42, Method: Composition-based stats. Identities = 91/214 (42%), Positives = 128/214 (59%), Gaps = 17/214 (7%) Query 6 IAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSVPRPGD 65 IAPSILA+D+AN E ++ A+++HID+MDG FVPNI+ G +V S+R Sbjct 6 IAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMR-------- 57 Query 66 ASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDPLHLVKLIKSKGIKA 125 K FDCH+MV +PE++V+ FA+ GAD T H E+T+ ++ IK+ G+KA Sbjct 58 -----KHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKA 112 Query 126 ACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQKFMEDMMPKVETLRA----KFPHLN 181 I PGT L L +D L+MTV PGFGGQ F+ + + KV T+ K + Sbjct 113 GVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFD 172 Query 182 IQVDGGLGKETIPKAAKAGANVIVAGTSVFTAAD 215 I+VDGG+ +TI +AGANV VAG+ +F A+D Sbjct 173 IEVDGGVDNKTIRACYEAGANVFVAGSYLFKASD 206 >gi|52695843|pdb|1TQJ|A Related structures Chain A, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase From Synechocystis To 1.6 Angstrom Resolution gi|52695844|pdb|1TQJ|B Related structures Chain B, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase From Synechocystis To 1.6 Angstrom Resolution gi|52695845|pdb|1TQJ|C Related structures Chain C, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase From Synechocystis To 1.6 Angstrom Resolution gi|52695846|pdb|1TQJ|D Related structures Chain D, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase From Synechocystis To 1.6 Angstrom Resolution gi|52695847|pdb|1TQJ|E Related structures Chain E, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase From Synechocystis To 1.6 Angstrom Resolution gi|52695848|pdb|1TQJ|F Related structures Chain F, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase From Synechocystis To 1.6 Angstrom Resolution Length=230 Score = 163 bits (413), Expect = 3e-41, Method: Composition-based stats. Identities = 94/233 (40%), Positives = 133/233 (57%), Gaps = 21/233 (9%) Query 5 IIAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSVPRPG 64 ++APSIL++DF+ LG E V AGADW+H+DVMDG FVPNIT+G IV ++R + Sbjct 6 VVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKT- 64 Query 65 DASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDPLHLVKL---IKSK 121 D H+M+ PEK+V+DFAK GAD + H E P HL + I+ Sbjct 65 ------------LDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASP-HLHRTLCQIREL 111 Query 122 GIKAACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQKFMEDMMPKVETLRAKFPHLN 181 G KA + P T +D L + P D+ L+M+V PGFGGQ F+ +++PK+ LR Sbjct 112 GKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERG 171 Query 182 ----IQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHDVISFMKEEVSKE 230 I+VDGGL + +AGAN IVAG++VF A + + I+ ++ E Sbjct 172 LDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSKRPE 224 >gi|4930130|pdb|1RPX|A Related structures Chain A, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum Chloroplasts gi|4930131|pdb|1RPX|B Related structures Chain B, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum Chloroplasts gi|4930132|pdb|1RPX|C Related structures Chain C, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum Chloroplasts Length=230 Score = 154 bits (390), Expect = 2e-38, Method: Composition-based stats. Identities = 91/227 (40%), Positives = 131/227 (57%), Gaps = 21/227 (9%) Query 5 IIAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSVPRPG 64 I++PSIL+++F+ LG + + AG DW+H+DVMDG FVPNIT+G +V SLR P Sbjct 12 IVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPITDLP- 70 Query 65 DASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDPLHL---VKLIKSK 121 D H+M+ P++ V DF K GAD + H E + +HL + IKS Sbjct 71 ------------LDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSST-IHLHRTINQIKSL 117 Query 122 GIKAACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQKFMEDMMPKVETLRAKFPH-- 179 G KA + PGT + + + +D+ L+M+V PGFGGQ F+E + K+ LR Sbjct 118 GAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERG 177 Query 180 LN--IQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHDVISFMK 224 LN I+VDGG+G + K +AGAN +VAG++VF A D + I +K Sbjct 178 LNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIK 224 >gi|62738756|pdb|1YTD|A Related structures Chain A, Crystal Structure Of A Nicotinate Phosphoribosyltransferase From Thermoplasma Acidophilum, Native Structure gi|62738757|pdb|1YTE|A Related structures Chain A, Crystal Structure Of A Nicotinate Phosphoribosyltransferase From Thermoplasma Acidophilum, Phosphoribosylpyrophosphate Bound Structure gi|62738758|pdb|1YTK|A Related structures Chain A, Crystal Structure Of A Nicotinate Phosphoribosyltransferase From Thermoplasma Acidophilum With Nicotinate Mononucleotide gi|114794692|pdb|2I1O|A Related structures Chain A, Crystal Structure Of A Nicotinate Phosphoribosyltransferase From Thermoplasma Acidophilum Length=398 Score = 30.8 bits (68), Expect = 0.28, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Query 180 LNIQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHD 218 + I V GGL + T+ K +AGA GTS+ ++A P D Sbjct 271 IKIMVSGGLDENTVKKLREAGAEAFGVGTSI-SSAKPFD 308 >gi|88192320|pdb|2B9M|Y Related structures Chain Y, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2 From A Crystal Structure Of The Whole Ribosomal Complex. This File Contains The 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2 From A Crystal Structure Of The Whole Ribosomal Complex". The Entire Crystal Structure Contains One 70s Ribosome, Trnas, Mrna And Release Factor Rf2 And Is Described In Remark 400. Length=365 Score = 27.3 bits (59), Expect = 3.7, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 66/165 (40%), Gaps = 22/165 (13%) Query 71 KKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDPLH--------LVKLIKSKG 122 +K T + +E+P W D A Q T D L++L++ Sbjct 21 QKETRLKELERRLEDPSLWNDPEAARKVSQEAARLRRTVDTFRSLESDLQGLLELMEELP 80 Query 123 IKAACAIKP-----GTSVDVLFELA----PHLDMALVMTVEPGFGGQKFME--DMMPKVE 171 + A+KP +D L+ PH + ++T++PG GG + + +M+ ++ Sbjct 81 AEEREALKPELEEAAKKLDELYHQTLLNFPHAEKNAILTIQPGAGGTEACDWAEMLLRMY 140 Query 172 TLRAKFPHLNIQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADP 216 T A+ ++V + P+A A ++V G + + P Sbjct 141 TRFAERQGFQVEV---VDLTPGPEAGIDYAQILVKGENAYGLLSP 182 >gi|3114279|pdb|1RYP|K Related structures Chain K, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution gi|3114293|pdb|1RYP|Y Related structures Chain Y, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution gi|11513422|pdb|1G65|J Related structures Chain J, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A Molecular Basis For Selectivity Of Alpha,Beta-Epoxyketone Proteasome Inhibitors gi|11513436|pdb|1G65|X Related structures Chain X, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A Molecular Basis For Selectivity Of Alpha,Beta-Epoxyketone Proteasome Inhibitors gi|11514001|pdb|1G0U|J Related structures Chain J, A Gated Channel Into The Proteasome Core Particle gi|11514015|pdb|1G0U|X Related structures Chain X, A Gated Channel Into The Proteasome Core Particle gi|14488815|pdb|1FNT|K Related structures Chain K, Crystal Structure Of The 20s Proteasome From Yeast In Complex With The Proteasome Activator Pa26 From Trypanosome Brucei At 3.2 Angstroms Resolution gi|14488829|pdb|1FNT|Y Related structures Chain Y, Crystal Structure Of The 20s Proteasome From Yeast In Complex With The Proteasome Activator Pa26 From Trypanosome Brucei At 3.2 Angstroms Resolution gi|20150386|pdb|1JD2|J Related structures Chain J, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a Complex: A Non-Covalent Proteasome Inhibitor gi|20150393|pdb|1JD2|Q Related structures Chain Q, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a Complex: A Non-Covalent Proteasome Inhibitor gi|75765709|pdb|1Z7Q|K Related structures Chain K, Crystal Structure Of The 20s Proteasome From Yeast In Complex With The Proteasome Activator Pa26 From Trypanosome Brucei At 3.2 Angstroms Resolution gi|75765723|pdb|1Z7Q|Y Related structures Chain Y, Crystal Structure Of The 20s Proteasome From Yeast In Complex With The Proteasome Activator Pa26 From Trypanosome Brucei At 3.2 Angstroms Resolution gi|93279377|pdb|2F16|J Related structures Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex With Bortezomib gi|93279391|pdb|2F16|X Related structures Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex With Bortezomib gi|93279665|pdb|2FNY|J Related structures Chain J, Homobelactosin C Bound To The Yeast 20s Proteasome gi|93279679|pdb|2FNY|X Related structures Chain X, Homobelactosin C Bound To The Yeast 20s Proteasome gi|99032211|pdb|2FAK|J Related structures Chain J, Crystal Structure Of Salinosporamide A In Complex With The Yeast 20s Proteasome gi|99032225|pdb|2FAK|X Related structures Chain X, Crystal Structure Of Salinosporamide A In Complex With The Yeast 20s Proteasome gi|112490852|pdb|2GPL|J Related structures Chain J, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific Proteasome Inhibitors gi|112490866|pdb|2GPL|X Related structures Chain X, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific Proteasome Inhibitors Length=198 Score = 27.3 bits (59), Expect = 3.9, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Query 178 PHLNIQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHDVISFMKEEVSKELRSR 234 PH + G G +T+ A AN+ + P V SF+++E++K +RSR Sbjct 40 PHTLMSFAGEAG-DTVQFAEYIQANIQLYSIREDYELSPQAVSSFVRQELAKSIRSR 95 >gi|49258320|pdb|1NKG|A Related structures Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Length=508 Score = 26.9 bits (58), Expect = 4.1, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 17/90 (18%) Query 123 IKAACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQKFM----EDMMPKVETLRAKFP 178 IK C T V+ P + MA +T EP G +F+ D++P E F Sbjct 69 IKVTCVTDTLTQYMVVHNGDPIIHMATYITAEPSIGELRFIARLNSDLLPNEE----PFG 124 Query 179 HLNIQVDGGLGKETIPKAAKAGANVIVAGT 208 ++ DG A G++V + G+ Sbjct 125 DVSTTADG---------TAIEGSDVFLVGS 145 >gi|49259080|pdb|1SO6|A Related structures Chain A, Crystal Structure Of E112qH136A DOUBLE MUTANT OF 3-Keto-L- Gulonate 6-Phosphate Decarboxylase With Bound L- Threonohydroxamate 4-Phosphate gi|49259081|pdb|1SO6|B Related structures Chain B, Crystal Structure Of E112qH136A DOUBLE MUTANT OF 3-Keto-L- Gulonate 6-Phosphate Decarboxylase With Bound L- Threonohydroxamate 4-Phosphate Length=216 Score = 26.6 bits (57), Expect = 5.4, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 0/50 (0%) Query 180 LNIQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHDVISFMKEEVSK 229 + V GGL E +P +V +AG S+ AA P + K +++ Sbjct 164 FKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRDAASPVEAARQFKRSIAE 213 >gi|49259078|pdb|1SO5|A Related structures Chain A, Crystal Structure Of E112q Mutant Of 3-Keto-L-Gulonate 6- Phosphate Decarboxylase With Bound L-Threonohydroxamate 4- Phosphate gi|49259079|pdb|1SO5|B Related structures Chain B, Crystal Structure Of E112q Mutant Of 3-Keto-L-Gulonate 6- Phosphate Decarboxylase With Bound L-Threonohydroxamate 4- Phosphate Length=216 Score = 26.6 bits (57), Expect = 5.4, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 0/50 (0%) Query 180 LNIQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHDVISFMKEEVSK 229 + V GGL E +P +V +AG S+ AA P + K +++ Sbjct 164 FKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRDAASPVEAARQFKRSIAE 213 >gi|49259074|pdb|1SO3|A Related structures Chain A, Crystal Structure Of H136a Mutant Of 3-Keto-L-Gulonate 6- Phosphate Decarboxylase With Bound L-Threonohydroxamate 4- Phosphate gi|49259075|pdb|1SO3|B Related structures Chain B, Crystal Structure Of H136a Mutant Of 3-Keto-L-Gulonate 6- Phosphate Decarboxylase With Bound L-Threonohydroxamate 4- Phosphate Length=216 Score = 26.6 bits (57), Expect = 5.5, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 0/50 (0%) Query 180 LNIQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHDVISFMKEEVSK 229 + V GGL E +P +V +AG S+ AA P + K +++ Sbjct 164 FKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRDAASPVEAARQFKRSIAE 213 >gi|49259076|pdb|1SO4|A Related structures Chain A, Crystal Structure Of K64a Mutant Of 3-Keto-L-Gulonate 6- Phosphate Decarboxylase With Bound L-Threonohydroxamate 4- Phosphate gi|49259077|pdb|1SO4|B Related structures Chain B, Crystal Structure Of K64a Mutant Of 3-Keto-L-Gulonate 6- Phosphate Decarboxylase With Bound L-Threonohydroxamate 4- Phosphate Length=216 Score = 26.6 bits (57), Expect = 5.5, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 0/50 (0%) Query 180 LNIQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHDVISFMKEEVSK 229 + V GGL E +P +V +AG S+ AA P + K +++ Sbjct 164 FKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRDAASPVEAARQFKRSIAE 213 >gi|20664209|pdb|1KV8|A Related structures Chain A, Crystal Structure Of 3-Keto-L-Gulonate 6-Phosphate Decarboxylase gi|20664210|pdb|1KV8|B Related structures Chain B, Crystal Structure Of 3-Keto-L-Gulonate 6-Phosphate Decarboxylase gi|20664213|pdb|1KW1|A Related structures Chain A, Crystal Structure Of 3-Keto-L-Gulonate 6-Phosphate Decarboxylase With Bound L-Gulonate 6-Phosphate gi|20664214|pdb|1KW1|B Related structures Chain B, Crystal Structure Of 3-Keto-L-Gulonate 6-Phosphate Decarboxylase With Bound L-Gulonate 6-Phosphate gi|38492925|pdb|1Q6L|A Related structures Chain A, Structure Of 3-Keto-L-Gulonate 6-Phosphate Decarboxylase With Bound L-Threonohydroxamate 4-Phosphate gi|38492926|pdb|1Q6L|B Related structures Chain B, Structure Of 3-Keto-L-Gulonate 6-Phosphate Decarboxylase With Bound L-Threonohydroxamate 4-Phosphate gi|38492927|pdb|1Q6O|A Related structures Chain A, Structure Of 3-Keto-L-Gulonate 6-Phosphate Decarboxylase With Bound L-Gulonaet 6-Phosphate gi|38492928|pdb|1Q6O|B Related structures Chain B, Structure Of 3-Keto-L-Gulonate 6-Phosphate Decarboxylase With Bound L-Gulonaet 6-Phosphate gi|38492929|pdb|1Q6Q|A Related structures Chain A, Structure Of 3-Keto-L-Gulonate 6-Phosphate Decarboxylase With Bound Xylitol 5-Phosphate gi|38492930|pdb|1Q6Q|B Related structures Chain B, Structure Of 3-Keto-L-Gulonate 6-Phosphate Decarboxylase With Bound Xylitol 5-Phosphate gi|38492931|pdb|1Q6R|A Related structures Chain A, Structure Of 3-Keto-L-Gulonate 6-Phosphate Decarboxylase With Bound L-Xylulose 5-Phosphate gi|38492932|pdb|1Q6R|B Related structures Chain B, Structure Of 3-Keto-L-Gulonate 6-Phosphate Decarboxylase With Bound L-Xylulose 5-Phosphate gi|66360425|pdb|1XBV|A Related structures Chain A, Crystal Structure Of 3-Keto-L-Gulonate 6-Phosphate Decarboxylase With Bound D-Ribulose 5-Phosphate gi|66360426|pdb|1XBV|B Related structures Chain B, Crystal Structure Of 3-Keto-L-Gulonate 6-Phosphate Decarboxylase With Bound D-Ribulose 5-Phosphate Length=216 Score = 26.6 bits (57), Expect = 5.5, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 0/50 (0%) Query 180 LNIQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHDVISFMKEEVSK 229 + V GGL E +P +V +AG S+ AA P + K +++ Sbjct 164 FKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRDAASPVEAARQFKRSIAE 213 >gi|66360429|pdb|1XBY|A Related structures Chain A, Structure Of 3-Keto-L-Gulonate 6-Phosphate Decarboxylase E112dT169A MUTANT WITH BOUND D-Ribulose 5-Phosphate gi|66360430|pdb|1XBY|B Related structures Chain B, Structure Of 3-Keto-L-Gulonate 6-Phosphate Decarboxylase E112dT169A MUTANT WITH BOUND D-Ribulose 5-Phosphate Length=216 Score = 26.2 bits (56), Expect = 6.8, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 0/50 (0%) Query 180 LNIQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHDVISFMKEEVSK 229 + V GGL E +P +V +AG S+ AA P + K +++ Sbjct 164 FKVTVAGGLALEDLPLFKGIPIHVFIAGRSIRDAASPVEAARQFKRSIAE 213 >gi|66360427|pdb|1XBX|A Related structures Chain A, Structure Of 3-Keto-L-Gulonate 6-Phosphate Decarboxylase E112dR139VT169A MUTANT WITH BOUND D-Ribulose 5-Phosphate gi|66360428|pdb|1XBX|B Related structures Chain B, Structure Of 3-Keto-L-Gulonate 6-Phosphate Decarboxylase E112dR139VT169A MUTANT WITH BOUND D-Ribulose 5-Phosphate gi|66360433|pdb|1XBZ|A Related structures Chain A, Crystal Structure Of 3-Keto-L-Gulonate 6-Phosphate Decarboxylase E112dR139VT169A MUTANT WITH BOUND L- Xylulose 5-Phosphate gi|66360434|pdb|1XBZ|B Related structures Chain B, Crystal Structure Of 3-Keto-L-Gulonate 6-Phosphate Decarboxylase E112dR139VT169A MUTANT WITH BOUND L- Xylulose 5-Phosphate Length=216 Score = 26.2 bits (56), Expect = 7.1, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 0/50 (0%) Query 180 LNIQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHDVISFMKEEVSK 229 + V GGL E +P +V +AG S+ AA P + K +++ Sbjct 164 FKVTVAGGLALEDLPLFKGIPIHVFIAGRSIRDAASPVEAARQFKRSIAE 213 >gi|39654994|pdb|1UQW|A Related structures Chain A, Crystal Structure Of Ylib Protein From Escherichia Coi gi|39654995|pdb|1UQW|B Related structures Chain B, Crystal Structure Of Ylib Protein From Escherichia Coi Length=509 Score = 26.2 bits (56), Expect = 8.1, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 0/36 (0%) Query 196 AAKAGANVIVAGTSVFTAADPHDVISFMKEEVSKEL 231 A A +V+VA S FT DP+D + + V+K Sbjct 20 GAFAAKDVVVAVGSNFTTLDPYDANDTLSQAVAKSF 55
  Database: PDB protein database
    Posted date:  Mar 16, 2007  5:59 PM
  Number of letters in database: 6,548,585
  Number of sequences in database:  29,318
Lambda     K      H
   0.320    0.136    0.414 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 29318
Number of Hits to DB: 3209156
Number of extensions: 129346
Number of successful extensions: 346
Number of sequences better than 10: 20
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 333
Number of HSP's successfully gapped: 20
Length of query: 238
Length of database: 6548585
Length adjustment: 90
Effective length of query: 148
Effective length of database: 3909965
Effective search space: 578674820
Effective search space used: 578674820
T: 11
A: 40
X1: 16 (7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 55 (25.8 bits)