Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference: Schäffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. RID: 1174309748-26130-139621659241.BLASTQ4 Database: Non-redundant SwissProt sequences 237,168 sequences; 88,903,512 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Results of PSI-Blast iteration 1 Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs
Query= RPE_YEAST Length=238
Legend:
- means that the alignment score was below the threshold on the previous iteration
- means that the alignment was checked on the previous iteration
Distance tree of results Sequences with E-value BETTER than threshold Score E Sequences producing significant alignments: (Bits) Value gi|1173139|sp|P46969|RPE_YEAST Ribulose-phosphate 3-epimerase... 482 4e-136 gi|51701877|sp|Q6FL81|RPE_CANGA Ribulose-phosphate 3-epimeras... 407 1e-113 gi|51701884|sp|Q755M2|RPE_ASHGO Ribulose-phosphate 3-epimeras... 381 1e-105 gi|34924986|sp|Q96AT9|RPE_HUMAN Ribulose-phosphate 3-epimeras... 259 7e-69 gi|34924979|sp|Q8VEE0|RPE_MOUSE Ribulose-phosphate 3-epimerase ( 257 2e-68 gi|75061668|sp|Q5R5Y2|RPE_PONPY Ribulose-phosphate 3-epimeras... 257 3e-68 gi|60390595|sp|Q9SE42|RPE1_ORYSA Ribulose-phosphate 3-epimera... 230 3e-60 gi|51701874|sp|O14105|RPE_SCHPO Ribulose-phosphate 3-epimeras... 229 6e-60 gi|18203210|sp|Q9L0Z5|RPE_STRCO Ribulose-phosphate 3-epimeras... 196 7e-50 gi|54039256|sp|P65761|RPE_MYCBO Ribulose-phosphate 3-epimeras... 186 7e-47 gi|17380276|sp|Q9CCP9|RPE_MYCLE Ribulose-phosphate 3-epimeras... 182 1e-45 gi|6647758|sp|O34557|RPE_BACSU Ribulose-phosphate 3-epimerase... 171 2e-42 gi|2829613|sp|P74061|RPE_SYNY3 Ribulose-phosphate 3-epimerase... 163 4e-40 gi|6226024|sp|O67098|RPE_AQUAE Ribulose-phosphate 3-epimerase... 159 9e-39 gi|2499728|sp|Q43843|RPE_SOLTU Ribulose-phosphate 3-epimerase... 157 5e-38 gi|6647759|sp|O66107|RPE_TREPA Ribulose-phosphate 3-epimerase... 156 6e-38 gi|6094119|sp|P51012|RPE_RHOCA Ribulose-phosphate 3-epimerase... 155 1e-37 gi|84028110|sp|P0AG09|RPE_ECO57 Ribulose-phosphate 3-epimeras... 154 3e-37 gi|25091192|sp|Q8K940|RPE_BUCAP Ribulose-phosphate 3-epimeras... 153 6e-37 gi|2833386|sp|Q43157|RPE_SPIOL Ribulose-phosphate 3-epimerase... 152 7e-37 gi|109940150|sp|Q9ZTP5|RPE_ORYSA Ribulose-phosphate 3-epimera... 152 1e-36 gi|11387063|sp|P57603|RPE_BUCAI Ribulose-phosphate 3-epimeras... 151 2e-36 gi|6226025|sp|Q9Z8Z9|RPE_CHLPN Ribulose-phosphate 3-epimerase... 151 2e-36 gi|6226026|sp|O84123|RPE_CHLTR Ribulose-phosphate 3-epimerase... 149 6e-36 gi|14195180|sp|Q9PKR7|RPE_CHLMU Ribulose-phosphate 3-epimeras... 147 3e-35 gi|1169389|sp|P45455|RPE_SERMA Ribulose-phosphate 3-epimerase... 144 3e-34 gi|1169388|sp|P44756|RPE_HAEIN Ribulose-phosphate 3-epimerase... 144 4e-34 gi|2833527|sp|Q58093|RPE_METJA Ribulose-phosphate 3-epimerase... 143 7e-34 gi|729235|sp|P40117|RPEC_RALEH Ribulose-phosphate 3-epimerase... 140 4e-33 gi|729236|sp|Q04539|RPEP_RALEH Ribulose-phosphate 3-epimerase... 137 3e-32 gi|6647760|sp|Q9ZJ75|RPE_HELPJ Ribulose-phosphate 3-epimerase... 130 5e-30 gi|2851605|sp|P51013|RPE_RHORU Ribulose-phosphate 3-epimerase... 128 2e-29 gi|46396626|sp|Q89A59|RPE_BUCBP Ribulose-phosphate 3-epimeras... 126 6e-29 gi|2829457|sp|P56188|RPE_HELPY Ribulose-phosphate 3-epimerase... 126 8e-29 gi|418563|sp|P32719|ALSE_ECOLI D-allulose-6-phosphate 3-epimeras 117 3e-26 gi|732069|sp|P39362|SGCE_ECOLI Protein sgcE 96.7 7e-20 gi|51701892|sp|Q8SRP6|RPE_ENCCU Ribulose-phosphate 3-epimeras... 90.5 5e-18 gi|2499727|sp|P75522|RPE_MYCPN Probable ribulose-phosphate 3-... 50.1 7e-06 gi|1351490|sp|P47358|RPE_MYCGE Probable ribulose-phosphate 3-... 48.5 2e-05 Sequences with E-value WORSE than threshold gi|81883012|sp|Q5I0M2|NADC_RAT Nicotinate-nucleotide pyrophos... 37.4 0.047 gi|11182415|sp|O74110|PYRF_THEAC Orotidine 5'-phosphate decar... 33.5 0.66 gi|76363456|sp|Q4J8X8|TRPA_SULAC Tryptophan synthase alpha chain 33.1 0.99 gi|110287683|sp|Q3T063|NADC_BOVIN Nicotinate-nucleotide pyrop... 32.7 1.0 gi|71153612|sp|Q57FG5|THIG_BRUAB Thiazole biosynthesis protei... 32.3 1.4 gi|32130192|sp|Q8YEZ2|THIG_BRUME Thiazole biosynthesis protein t 32.3 1.4 gi|13124375|sp|O14300|OXA11_SCHPO Inner membrane protein oxa1... 32.3 1.4 gi|32130187|sp|Q8G2U9|THIG_BRUSU Thiazole biosynthesis protein t 32.3 1.4 gi|18202645|sp|Q98AZ6|THIG_RHILO Thiazole biosynthesis protein t 31.6 2.5 gi|81307794|sp|Q4ZLQ1|HIS4_PSEU2 1-(5-phosphoribosyl)-5-[(5-p... 31.2 3.6 gi|91206941|sp|Q48C80|HIS4_PSE14 1-(5-phosphoribosyl)-5-[(5-p... 31.2 3.6 gi|67460362|sp|Q7V364|AROC_PROMP Chorismate synthase (5-enolp... 31.2 3.6 gi|21903445|sp|Q15274|NADC_HUMAN Nicotinate-nucleotide pyroph... 30.8 3.9 gi|97180276|sp|Q8GU86|PDR5_ORYSA Pleiotropic drug resistance pro 30.8 4.0 gi|74671175|sp|Q4WNS8|ECM33_ASPFU Protein ecm33 precursor 30.8 4.2 gi|3041689|sp|P42405|HPS_BACSU 3-hexulose-6-phosphate synthas... 30.8 4.3 gi|60392352|sp|Q603K2|HIS4_METCA 1-(5-phosphoribosyl)-5-[(5-p... 30.8 4.4 gi|31563079|sp|Q87UG3|HIS4_PSESM 1-(5-phosphoribosyl)-5-[(5-p... 30.8 4.4 gi|1730919|sp|P52055|YPI1_VIBAL UPF0001 protein in pilT-proC int 30.8 4.6 gi|20141037|sp|Q9H4Z2|ZN335_HUMAN Zinc finger protein 335 30.8 4.6 gi|21759297|sp|Q91X91|NADC_MOUSE Nicotinate-nucleotide pyroph... 30.4 5.1 gi|91206942|sp|Q4KJS5|HIS4_PSEF5 1-(5-phosphoribosyl)-5-[(5-p... 30.4 5.7 gi|31563093|sp|Q88R42|HIS4_PSEPK 1-(5-phosphoribosyl)-5-[(5-p... 30.4 5.7 gi|32130190|sp|Q8UCD2|THIG_AGRT5 Thiazole biosynthesis protein t 30.4 5.8 gi|23822009|sp|Q8PV88|PYRF_METMA Orotidine 5'-phosphate decar... 30.4 6.0 gi|71153607|sp|Q5WH85|THIG_BACSK Thiazole biosynthesis protein t 30.0 8.1 gi|47606188|sp|Q8P5R7|THIE_XANCP Thiamine-phosphate pyrophosp... 30.0 8.3 gi|116256185|sp|Q31JD2|THIG_THICR Thiazole biosynthesis protein 29.6 9.1 gi|91206953|sp|Q31E65|HIS4_THICR 1-(5-phosphoribosyl)-5-[(5-p... 29.6 9.8 gi|3043366|sp|Q48907|HPS_METAM 3-hexulose-6-phosphate synthas... 29.6 9.8 gi|23822016|sp|Q8TS37|PYRF_METAC Orotidine 5'-phosphate decar... 29.6 9.9
Database: Non-redundant SwissProt sequences Posted date: Mar 16, 2007 5:59 PM Number of letters in database: 88,903,512 Number of sequences in database: 237,168 Lambda K H 0.320 0.136 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 237168 Number of Hits to DB: 10617431 Number of extensions: 442384 Number of successful extensions: 1159 Number of sequences better than 10: 19 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 1166 Number of HSP's successfully gapped: 19 Length of query: 238 Length of database: 88903512 Length adjustment: 109 Effective length of query: 129 Effective length of database: 63052200 Effective search space: 8133733800 Effective search space used: 8133733800 T: 11 A: 40 X1: 16 (7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 65 (29.6 bits)