Package model

Class Summary
AlignObject This class does the representation of an alignment object.
ClusterCoordinates This class represents the cluster coordinates.
ClusterGroup This class defines a cluster group which stands for a subfamily of proteins.
FuncResidueImpl Implementation of the FuncResidue Interface.
Methods The object of that class is mainly used for passing information which methods are used for the application.
MouseSequenceListener MouseSequenceListener for listening on the mouse event from the alignment panel.
PredictedPosition This class holds information about the predicted positions (SDPs) from the S3Det Output.
ResidueCoordinates This class represents the residue coordinates.
ResidueImpl Implementation of the Residue Interface.
S3DetObject This class represents an object of the S3Det information.
SequenceCluster This class provides information about which sequence belongs to which cluster from the S3Det.
SequenceCoordinates This class contains information about the sequence coordinates from the S3Det.
SequenceImpl Implementation of the Sequence Interface.
UDMObject This class represents a user defined method (UDM) object, which should be generic for a any file which gives position, amino acid and score.
XDetObject This class does the representation of an XDet object.