interfaces
Interface Sequence

All Known Implementing Classes:
SequenceImpl

public interface Sequence

Interface as a representation for the protein sequence.


Method Summary
 int getEnd()
           
 int getLength()
           
 char getLetterAt(int i)
           
 java.lang.String getName()
           
 char[] getSequence()
           
 char[] getSequence(int start, int end)
           
 java.lang.String getSequenceAsString()
           
 int getStart()
           
 void setEnd(int end)
           
 void setName(java.lang.String name)
           
 void setSequence(java.lang.String sequence)
           
 void setStart(int start)
           
 

Method Detail

setName

void setName(java.lang.String name)

getName

java.lang.String getName()

setStart

void setStart(int start)

getStart

int getStart()

setEnd

void setEnd(int end)

getEnd

int getEnd()

getLength

int getLength()

setSequence

void setSequence(java.lang.String sequence)

getSequenceAsString

java.lang.String getSequenceAsString()

getSequence

char[] getSequence()

getSequence

char[] getSequence(int start,
                   int end)

getLetterAt

char getLetterAt(int i)