Package view

Class Summary
AlignFrame This class represents the main user interface containing the different panels, such as the alignment panel.
AlignPanel Represents the whole alignment panel.
AlignViewProps Defines the view properties for the alignment.
Cluster3DFrame This class draws a window containing a graphical representation of clusters defined by S3Det.
ClusterWindowListener Default StructureWindowListener class, handles what happens when the Structure3DFrame is closed.
ColorSchemeInfo  
IndexPanel This class represents the index of the sequence alignment.
LoadAlignFrame This the main entry point to the application.
LoadMethodFrame This is the load frame for a user-defined method.
LoadS3DetFrame This the load frame for the S3Det method.
LoadStructureFrame This class is the loading frame for the JMolViewer.
LoadXDetFrame This the load frame for the XDet method.
MethodPanel This class represents the panel where the methods are applied.
MyCallbackListener  
NamePainter Represents the painter class for the protein names.
NamePanel This panel class is mainly uses by the NameRenderer for the proteinID aka. name strings.
PickPointsBehavior This class defines the behavior needed for selecting items on Cluster3DFrame
SelectionFrame  
SeparatorPanel Used to separate the sections of the StatusPanel.
SequencePainter This class does all the sequence painting, implements Observable, as the structure frame listens to the mouse events on the alignment panel.
SequencePanel This panel class is mainly uses by the SeqRenderer for the protein sequences.
SliderChangeListener This class is an extension to the simple change listener on a JSlider object.
SliderKeyAdapter  
SliderPanel Represents the panel on the upper left corner which contains the threshold panels + sliders.
StatusPanel Extended StatusPanel for showing the alignment name, the sequence length and the sequence number.
Structure3DFrame This class is the viewer for the protein 3D structure.
StructureWindowListener Default StructureWindowListener class, handles what happens when the Structure3DFrame is closed.