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java.lang.Objectutil.BlastPDB
public class BlastPDB
Constructor Summary | |
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BlastPDB()
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Method Summary | |
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static java.lang.String |
blastThePDB(java.lang.String _sequence,
double _eCutOff)
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static boolean |
evaluateBestHit(java.lang.String bestHit)
Check PDB result against the specified threshold |
static java.lang.String |
findBestHit(java.lang.String blastResult)
Gets best PDB hit |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public BlastPDB()
Method Detail |
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public static java.lang.String blastThePDB(java.lang.String _sequence, double _eCutOff)
public static java.lang.String findBestHit(java.lang.String blastResult)
blastResult
- Output from blast
public static boolean evaluateBestHit(java.lang.String bestHit)
bestHit
- PDB hit on format ID|CHAIN|EVALUE|IDENTITIES
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