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java.lang.Objectmodel.UDMObject
public class UDMObject
This class represents a user defined method (UDM) object, which should be generic for a any file which gives position, amino acid and score.
Constructor Summary | |
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UDMObject()
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Method Summary | |
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double |
getCurrentScoreCutoff()
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java.lang.String |
getFilename()
Returns the name of the file. |
double |
getMaxValue()
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java.lang.String |
getMethodName()
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double |
getMinValue()
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java.util.HashMap<java.lang.Integer,ResidueImpl> |
getPos2ResMap()
Returns the Position-To-Residue HashMap. |
ResidueImpl[] |
getResidues()
Returns the residues as an array. |
int |
getResNumber()
Returns the residue number. |
double |
getScoreCutoff()
Returns the score cutoff. |
boolean |
isIncreasingScore()
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void |
setCurrentScoreCutoff(double currentScoreCutoff)
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void |
setFilename(java.lang.String filename)
Sets the name of the file. |
void |
setIncreasingScore(boolean isIncreasingScore)
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void |
setMethodName(java.lang.String methodName)
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void |
setPos2ResMap(java.util.HashMap<java.lang.Integer,ResidueImpl> pos2ResMap)
Sets the Position-To-Residue HashMap. |
void |
setResidues(ResidueImpl[] residues)
Sets the functional residues array. |
void |
setResNumber(int resNumber)
Set the residues number. |
void |
setScoreCutoff(double scoreCutoff)
Sets the score cutoff. |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public UDMObject()
Method Detail |
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public java.lang.String getFilename()
public void setFilename(java.lang.String filename)
filename
- public ResidueImpl[] getResidues()
public void setResidues(ResidueImpl[] residues)
residues
- public int getResNumber()
public void setResNumber(int resNumber)
resNumber
- public java.util.HashMap<java.lang.Integer,ResidueImpl> getPos2ResMap()
public void setPos2ResMap(java.util.HashMap<java.lang.Integer,ResidueImpl> pos2ResMap)
pos2ResMap
- public double getScoreCutoff()
public void setScoreCutoff(double scoreCutoff)
scoreCutoff
- doublepublic double getCurrentScoreCutoff()
public void setCurrentScoreCutoff(double currentScoreCutoff)
currentScoreCutoff
- the currentScoreCutoff to setpublic java.lang.String getMethodName()
public void setMethodName(java.lang.String methodName)
methodName
- the methodName to setpublic double getMaxValue()
public double getMinValue()
public boolean isIncreasingScore()
public void setIncreasingScore(boolean isIncreasingScore)
isIncreasingScore
- the increasingScore to set
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