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java.lang.Objectmodel.AlignObject
public class AlignObject
This class does the representation of an alignment object.
Constructor Summary | |
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AlignObject()
Default constructor. |
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AlignObject(SequenceImpl[] sequences)
Constructor for AlignObject with sequences as parameter. |
Method Summary | |
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void |
clearGaps()
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java.lang.String |
getFilename()
Returns the filename.an |
int |
getHeight()
Returns the height of the alignment through the number of Sequences. |
int |
getProteinNumber()
Returns the number of protein. |
SequenceImpl |
getSequenceAt(int i)
Returns the sequence for a certain parameter index. |
SequenceImpl[] |
getSequences()
Returns the array of sequence objects. |
int |
getWidth()
Returns the width through the maximum of the longest sequence. |
void |
reloadOnlyAlignment(AlignFrame alignFrame)
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void |
setFilename(java.lang.String filename)
Sets the filename. |
void |
setProteinNumber(int proteinNumber)
Sets the number of protein. |
void |
setSequences(SequenceImpl[] sequences)
Sets the array of sequence objects. |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public AlignObject()
public AlignObject(SequenceImpl[] sequences)
sequences
- Method Detail |
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public int getHeight()
public int getWidth()
public SequenceImpl getSequenceAt(int i)
i
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public java.lang.String getFilename()
public void setFilename(java.lang.String filename)
filename
- public SequenceImpl[] getSequences()
public void setSequences(SequenceImpl[] sequences)
sequences
- public int getProteinNumber()
public void setProteinNumber(int proteinNumber)
proteinNumber
- public void reloadOnlyAlignment(AlignFrame alignFrame)
public void clearGaps()
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