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java.lang.Objectmodel.S3DetObject
public class S3DetObject
This class represents an object of the S3Det information.
Constructor Summary | |
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S3DetObject()
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Method Summary | |
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ClusterCoordinates[] |
getClusterCoords()
Returns the cluster coordinates. |
int[] |
getConservedPositions()
Returns the conserved positions. |
java.lang.String |
getFilename()
Returns the file name. |
java.util.HashMap<java.lang.String,java.lang.Integer> |
getName2ClusterIndex()
Returns the name-to-clusterIndex HashMap. |
int |
getNumberOfSelectedAxes()
Returns the total number of selected axes. |
java.util.HashMap<java.lang.Integer,PredictedPosition> |
getPos2PredPosition()
Returns the Position-To-PredictedPosition HashMap. |
PredictedPosition[] |
getPredictedPositions()
Returns the predicted positions. |
ResidueCoordinates[] |
getResCoords()
Returns the residue coordinates. |
SequenceCluster[] |
getSeqClusters()
Returns the sequence clusters. |
SequenceCoordinates[] |
getSeqCoords()
Returns the sequence coordinates. |
void |
setClusterCoords(ClusterCoordinates[] clusterCoords)
Sets the cluster coordinates. |
void |
setConservedPositions(int[] conservedPositions)
Sets the conserved positions. |
void |
setFilename(java.lang.String filename)
Sets the file name. |
void |
setName2ClusterIndex(java.util.HashMap<java.lang.String,java.lang.Integer> name2ClusterIndex)
Sets the name-to-clusterIndex HashMap. |
void |
setNumberOfSelectedAxes(int numberOfSelectedAxes)
Sets the total number of selected axes. |
void |
setPos2PredPosition(java.util.HashMap<java.lang.Integer,PredictedPosition> pos2PredPosition)
Sets the Position-To-PredictedPosition HashMap. |
void |
setPredictedPositions(PredictedPosition[] predictedPositions)
Sets the predicted positions. |
void |
setResCoords(ResidueCoordinates[] resCoords)
Sets the residue coordinates. |
void |
setSeqClusters(SequenceCluster[] seqClusters)
Sets the sequence clusters. |
void |
setSeqCoords(SequenceCoordinates[] seqCoords)
Sets the sequence coordinates. |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public S3DetObject()
Method Detail |
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public java.lang.String getFilename()
public void setFilename(java.lang.String filename)
filename
- public SequenceCoordinates[] getSeqCoords()
public void setSeqCoords(SequenceCoordinates[] seqCoords)
seqCoords
- public ResidueCoordinates[] getResCoords()
public void setResCoords(ResidueCoordinates[] resCoords)
resCoords
- public SequenceCluster[] getSeqClusters()
public void setSeqClusters(SequenceCluster[] seqClusters)
seqClusters
- public ClusterCoordinates[] getClusterCoords()
public void setClusterCoords(ClusterCoordinates[] clusterCoords)
clusterCoords
- public PredictedPosition[] getPredictedPositions()
public void setPredictedPositions(PredictedPosition[] predictedPositions)
predictedPositions
- public int[] getConservedPositions()
public void setConservedPositions(int[] conservedPositions)
conservedPositions
- public int getNumberOfSelectedAxes()
public void setNumberOfSelectedAxes(int numberOfSelectedAxes)
numberOfSelectedAxes
- public java.util.HashMap<java.lang.Integer,PredictedPosition> getPos2PredPosition()
public void setPos2PredPosition(java.util.HashMap<java.lang.Integer,PredictedPosition> pos2PredPosition)
pos2PredPosition
- HashMappublic java.util.HashMap<java.lang.String,java.lang.Integer> getName2ClusterIndex()
public void setName2ClusterIndex(java.util.HashMap<java.lang.String,java.lang.Integer> name2ClusterIndex)
name2ClusterIndex
- HashMap
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