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Hierarchy For All Packages
Package Hierarchies:
interfaces
,
model
,
parser
,
plugins
,
test
,
util
,
view
Class Hierarchy
java.lang.Object
javax.swing.AbstractAction (implements javax.swing.Action, java.lang.Cloneable, java.io.Serializable)
view.
LoadAlignFrame.OpenFileAction
view.
LoadMethodFrame.OpenFileAction
view.
LoadS3DetFrame.OpenFileAction
view.
LoadStructureFrame.OpenFileAction
view.
LoadXDetFrame.OpenFileAction
java.util.AbstractMap<K,V> (implements java.util.Map<K,V>)
java.util.HashMap<K,V> (implements java.lang.Cloneable, java.util.Map<K,V>, java.io.Serializable)
util.
AAMap
util.
Alignment
util.
AlignmentExporter
model.
AlignObject
view.
AlignPanel.ScrollAdjuster
(implements java.awt.event.AdjustmentListener)
view.
AlignViewProps
(implements java.lang.Cloneable)
test.
AlignViewTest
Behavior
view.
PickPointsBehavior
util.
BlastPDB
model.
ClusterCoordinates
(implements interfaces.
Coordinates
)
model.
ClusterGroup
view.
ClusterWindowListener
(implements java.awt.event.WindowListener)
parser.
ColorParser
util.
ColorScheme
java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
view.
ColorSchemeInfo
java.awt.Container
javax.swing.JComponent (implements java.io.Serializable)
javax.swing.JPanel (implements javax.accessibility.Accessible)
view.
AlignPanel
(implements java.awt.print.Printable)
view.
IndexPanel
(implements interfaces.
Observer
)
view.
MethodPanel
(implements interfaces.
Observer
)
view.
NamePanel
view.
SeparatorPanel
view.
SequencePanel
view.
SliderPanel
view.
StatusPanel
view.
NamePainter
(implements interfaces.
Observer
)
util.
SequenceLogo.LogoPosition
view.
SequencePainter
(implements interfaces.
Observable
, interfaces.
Observer
)
java.awt.Window (implements javax.accessibility.Accessible)
java.awt.Dialog
javax.swing.JDialog (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
util.
FilterAlignment
view.
LoadAlignFrame
view.
LoadMethodFrame
view.
LoadS3DetFrame
view.
LoadStructureFrame
view.
LoadXDetFrame
util.
RunMethods
java.awt.Frame (implements java.awt.MenuContainer)
javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
view.
AlignFrame
view.
Cluster3DFrame
(implements java.awt.event.ItemListener, interfaces.
Observer
)
view.
SelectionFrame
util.
SequenceLogo
view.
Structure3DFrame
(implements interfaces.
Observer
)
util.
Constants
java.util.EventObject (implements java.io.Serializable)
util.
FileDrop.Event
util.
FileDrop
util.
FileDrop.TransferableObject
(implements java.awt.datatransfer.Transferable)
javax.swing.filechooser.FileFilter
util.
FastaFileFilter
util.
PngFileFilter
util.
FilterAlignment.StreamGobbler
(implements java.lang.Runnable)
model.
FuncResidueImpl
(implements java.lang.Comparable<T>, interfaces.
FuncResidue
)
util.
ImageExporter
java.awt.event.KeyAdapter (implements java.awt.event.KeyListener)
view.
SliderKeyAdapter
model.
Methods
parser.
MfaParser
view.
MyCallbackListener
java.util.Observable
model.
MouseSequenceListener
(implements java.awt.event.MouseListener)
util.
PdbFileOpener
(implements java.lang.Runnable)
PDBinterpreter
util.
PDBFile
util.
PluginLoader
model.
PredictedPosition
util.
PrintUtilities
(implements java.awt.print.Printable)
model.
ResidueCoordinates
(implements interfaces.
Coordinates
)
model.
ResidueImpl
(implements interfaces.
Residue
)
util.
ResidueSelectionManager
util.
RunMethods.StreamGobbler
(implements java.lang.Runnable)
model.
S3DetObject
parser.
S3DetParser
test.
S3DetParserTest
util.
ScreenConfig
view.
SelectionFrame.SelectionScrollAdjuster
(implements java.awt.event.AdjustmentListener)
util.
SelectionManager
model.
SequenceCluster
model.
SequenceCoordinates
(implements interfaces.
Coordinates
)
model.
SequenceImpl
(implements interfaces.
Sequence
)
util.
SequenceLogo.FrequencyImage
(implements java.lang.Comparable<T>)
util.
SequenceLogo.LogoScrollAdjuster
(implements java.awt.event.AdjustmentListener)
util.
SequenceManager
util.
SequenceOrderer
view.
SliderChangeListener
(implements javax.swing.event.ChangeListener)
view.
StructureWindowListener
(implements java.awt.event.WindowListener)
model.
UDMObject
parser.
UDMParser
test.
UDMParserTest
model.
XDetObject
parser.
XDetParser
test.
XDetParserTest
Interface Hierarchy
interfaces.
Coordinates
util.
FileDrop.Listener
util.
FileDrop.TransferableObject.Fetcher
interfaces.
FuncResidue
interfaces.
Observable
interfaces.
Observer
interfaces.
Residue
interfaces.
Sequence
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