util
Class Constants
java.lang.Object
util.Constants
public class Constants
- extends java.lang.Object
This class defines some constants for the whole software.
Method Summary |
static boolean |
isGap(char c)
|
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
APPNAME
public static final java.lang.String APPNAME
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- Constant Field Values
VERSIONDATE
public static final java.lang.String VERSIONDATE
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- Constant Field Values
VERSION
public static final java.lang.String VERSION
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- Constant Field Values
APPTITLE
public static final java.lang.String APPTITLE
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- Constant Field Values
DEFAULT_WIDTH
public static final int DEFAULT_WIDTH
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- Constant Field Values
DEFAULT_HEIGHT
public static final int DEFAULT_HEIGHT
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- Constant Field Values
MAX_UDM_METHODS
public static final int MAX_UDM_METHODS
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- Constant Field Values
dS
public static final java.lang.String dS
FILE_PREFIX
public static final java.lang.String FILE_PREFIX
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- Constant Field Values
MANUAL_PATH
public static final java.lang.String MANUAL_PATH
TUTORIAL_PATH
public static final java.lang.String TUTORIAL_PATH
JDET_URL
public static final java.lang.String JDET_URL
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- Constant Field Values
MANUAL_URL
public static final java.lang.String MANUAL_URL
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- Constant Field Values
TUTORIAL_URL
public static final java.lang.String TUTORIAL_URL
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- Constant Field Values
AA_PER_LINE
public static final int AA_PER_LINE
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- Constant Field Values
FTPSERVER
public static final java.lang.String FTPSERVER
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- Constant Field Values
PDB_WSDLSERVER
public static final java.lang.String PDB_WSDLSERVER
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- Constant Field Values
PDB_IDENTITIES_THRESHOLD
public static final double PDB_IDENTITIES_THRESHOLD
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- Constant Field Values
PDB_EVALUE_THRESHOLD
public static final double PDB_EVALUE_THRESHOLD
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- Constant Field Values
CONFIG_DIR
public static final java.lang.String CONFIG_DIR
METHODS_DIR
public static final java.lang.String METHODS_DIR
TMP_DIR
public static final java.lang.String TMP_DIR
FILTER_PRESETS_FILE
public static final java.lang.String FILTER_PRESETS_FILE
METHOD_METRICS_FILE
public static final java.lang.String METHOD_METRICS_FILE
LOADFRAME_WIDTH
public static final int LOADFRAME_WIDTH
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- Constant Field Values
LOADFRAME_HEIGHT
public static final int LOADFRAME_HEIGHT
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- Constant Field Values
JMOLPANEL_WIDTH
public static final int JMOLPANEL_WIDTH
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- Constant Field Values
JMOLPANEL_HEIGHT
public static final int JMOLPANEL_HEIGHT
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- Constant Field Values
JAVA3DFRAME_WIDTH
public static final int JAVA3DFRAME_WIDTH
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- Constant Field Values
JAVA3DFRAME_HEIGHT
public static final int JAVA3DFRAME_HEIGHT
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- Constant Field Values
ALIGNPANEL_WIDTH
public static final int ALIGNPANEL_WIDTH
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- Constant Field Values
ALIGNPANEL_HEIGHT
public static final int ALIGNPANEL_HEIGHT
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- Constant Field Values
ALIGNVIEW_FONT
public static final java.lang.String ALIGNVIEW_FONT
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- Constant Field Values
ALIGNVIEW_FONTSTYLE
public static final int ALIGNVIEW_FONTSTYLE
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- Constant Field Values
ALIGNVIEW_FONTSIZE
public static final int ALIGNVIEW_FONTSIZE
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- Constant Field Values
SEQPANEL_WIDTH
public static final int SEQPANEL_WIDTH
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- Constant Field Values
SEQPANEL_HEIGHT
public static final int SEQPANEL_HEIGHT
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- Constant Field Values
INFOPANEL_WIDTH
public static final int INFOPANEL_WIDTH
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- Constant Field Values
INFOPANEL_HEIGHT
public static final int INFOPANEL_HEIGHT
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- Constant Field Values
INDEXPANEL_WIDTH
public static final int INDEXPANEL_WIDTH
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- Constant Field Values
INDEXPANEL_HEIGHT
public static final int INDEXPANEL_HEIGHT
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- Constant Field Values
INDEXPANEL_BGCOLOR
public static final java.awt.Color INDEXPANEL_BGCOLOR
DESCBOXPNL_BGCOLOR
public static final java.awt.Color DESCBOXPNL_BGCOLOR
METHODDESCPNL_WIDTH
public static final int METHODDESCPNL_WIDTH
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- Constant Field Values
METHODDESCPNL_HEIGHT
public static int METHODDESCPNL_HEIGHT
METHODDESCPNL_BGCOLOR
public static final java.awt.Color METHODDESCPNL_BGCOLOR
METHODPANEL_WIDTH
public static final int METHODPANEL_WIDTH
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- Constant Field Values
METHODPANEL_HEIGHT
public static int METHODPANEL_HEIGHT
METHODPANEL_BGCOLOR
public static final java.awt.Color METHODPANEL_BGCOLOR
METHOD_OFFSET
public static int METHOD_OFFSET
NAMEPANEL_WIDTH
public static final int NAMEPANEL_WIDTH
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- Constant Field Values
NAMEPANEL_HEIGHT
public static final int NAMEPANEL_HEIGHT
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- Constant Field Values
NAMEPANEL_SELECTED_BGSEQUENCE
public static final java.awt.Color NAMEPANEL_SELECTED_BGSEQUENCE
NAMEPANEL_SELECTED_FGSEQUENCE
public static final java.awt.Color NAMEPANEL_SELECTED_FGSEQUENCE
MIN_PDB_SEQ_ALIGNMENT
public static final double MIN_PDB_SEQ_ALIGNMENT
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- Constant Field Values
CLUSTERSETTINGSFRM_WIDTH
public static final int CLUSTERSETTINGSFRM_WIDTH
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- Constant Field Values
CLUSTERSETTINGSFRM_HEIGHT
public static final int CLUSTERSETTINGSFRM_HEIGHT
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- Constant Field Values
AXESFRAME_WIDTH
public static final int AXESFRAME_WIDTH
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- Constant Field Values
AXESFRAME_HEIGHT
public static final int AXESFRAME_HEIGHT
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- Constant Field Values
AXISFRAME_MAX
public static final float AXISFRAME_MAX
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- Constant Field Values
SEQUENCE_SHAPE_NAME
public static final java.lang.String SEQUENCE_SHAPE_NAME
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- Constant Field Values
RESIDUE_SHAPE_NAME
public static final java.lang.String RESIDUE_SHAPE_NAME
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- Constant Field Values
SELECTED_RESIDUE_SHAPE_NAME
public static final java.lang.String SELECTED_RESIDUE_SHAPE_NAME
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- Constant Field Values
CLUSTER_SHAPE_NAME
public static final java.lang.String CLUSTER_SHAPE_NAME
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- Constant Field Values
SEQUENCE_POINT_SIZE
public static final float SEQUENCE_POINT_SIZE
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- Constant Field Values
RESIDUE_POINT_SIZE
public static final float RESIDUE_POINT_SIZE
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- Constant Field Values
SELECTED_RESIDUE_POINT_SIZE
public static final float SELECTED_RESIDUE_POINT_SIZE
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- Constant Field Values
CLUSTER_POINT_SIZE
public static final float CLUSTER_POINT_SIZE
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- Constant Field Values
SELECTION_PRECISION
public static final float SELECTION_PRECISION
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- Constant Field Values
XDETSLIDER_TOOLTIP
public static final java.lang.String XDETSLIDER_TOOLTIP
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- Constant Field Values
ENTROPYSLIDER_TOOLTIP
public static final java.lang.String ENTROPYSLIDER_TOOLTIP
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- Constant Field Values
S3DETSLIDER_TOOLTIP
public static final java.lang.String S3DETSLIDER_TOOLTIP
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- Constant Field Values
OTHERSLIDER_TOOLTIP
public static final java.lang.String OTHERSLIDER_TOOLTIP
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- Constant Field Values
SELECTION_ONLY
public static final int SELECTION_ONLY
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- Constant Field Values
SELECTION_AND
public static final int SELECTION_AND
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- Constant Field Values
SELECTION_OR
public static final int SELECTION_OR
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- Constant Field Values
OTHERSLIDER_DEFAULT
public static final int[] OTHERSLIDER_DEFAULT
LABEL_FONT_SIZE
public static final int LABEL_FONT_SIZE
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- Constant Field Values
MAX_LABEL_LENGTH
public static final int MAX_LABEL_LENGTH
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- Constant Field Values
XDETCUTOFF_DEFAULT
public static final double XDETCUTOFF_DEFAULT
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- Constant Field Values
ENTROPYCUTOFF_DEFAULT
public static final double ENTROPYCUTOFF_DEFAULT
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- Constant Field Values
S3DETCUTOFF_DEFAULT
public static final double S3DETCUTOFF_DEFAULT
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- Constant Field Values
OTHERCUTOFF_DEFAULT
public static final double OTHERCUTOFF_DEFAULT
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- Constant Field Values
TEXTFIELD_TOOLTIP
public static final java.lang.String TEXTFIELD_TOOLTIP
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- Constant Field Values
GREEN
public static final java.awt.Color GREEN
YELLOW
public static final java.awt.Color YELLOW
ORANGE
public static final java.awt.Color ORANGE
RED
public static final java.awt.Color RED
GROUPCOLORS
public static final java.awt.Color[] GROUPCOLORS
SELECTED_PROTEIN_COLOR
public static final java.awt.Color SELECTED_PROTEIN_COLOR
SELECTED_RESIDUE_COLOR
public static final java.awt.Color SELECTED_RESIDUE_COLOR
DEFAULT_RESIDUE_COLOR
public static final java.awt.Color DEFAULT_RESIDUE_COLOR
DEFAULT_RESIDUE_COLOR_NAME
public static final java.lang.String DEFAULT_RESIDUE_COLOR_NAME
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- Constant Field Values
DEFAULT_CLUSTER_COLOR
public static final java.awt.Color DEFAULT_CLUSTER_COLOR
DEFAULT_CLUSTER_COLOR_NAME
public static final java.lang.String DEFAULT_CLUSTER_COLOR_NAME
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- Constant Field Values
DEFAULT_AXIS_COLOR
public static final java.awt.Color DEFAULT_AXIS_COLOR
PICK_AREA_COLOR
public static final java.awt.Color PICK_AREA_COLOR
AA_CODES
public static final java.util.HashMap<java.lang.String,java.lang.Integer> AA_CODES
PANEL_LOGO_WIDTH
public static final int PANEL_LOGO_WIDTH
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- Constant Field Values
LOGO_HEIGHT
public static final int LOGO_HEIGHT
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- Constant Field Values
PANEL_LOGO_MARGIN
public static final int PANEL_LOGO_MARGIN
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- Constant Field Values
LETTER_WIDTH
public static final int LETTER_WIDTH
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- Constant Field Values
LOGOHEADER_HEIGHT
public static final int LOGOHEADER_HEIGHT
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- Constant Field Values
LOGOHEADER_FONT_SIZE
public static final int LOGOHEADER_FONT_SIZE
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- Constant Field Values
LOGOHEADER_FONT
public static final java.lang.String LOGOHEADER_FONT
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- Constant Field Values
LOGOHEADER_FONTSTYLE
public static final int LOGOHEADER_FONTSTYLE
LOGOHEADER_FONTSIZE
public static final int LOGOHEADER_FONTSIZE
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- Constant Field Values
LOGOHEADER_MARGIN
public static final int LOGOHEADER_MARGIN
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- Constant Field Values
PLUGIN_TYPE_METHOD
public static final int PLUGIN_TYPE_METHOD
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- Constant Field Values
PLUGIN_TYPE_CONVERSION
public static final int PLUGIN_TYPE_CONVERSION
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- Constant Field Values
METHOD_PLUGINS_DIR
public static final java.lang.String METHOD_PLUGINS_DIR
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- Constant Field Values
METHOD_PLUGINS_PACKAGE
public static final java.lang.String METHOD_PLUGINS_PACKAGE
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- Constant Field Values
CONVERSION_PLUGINS_DIR
public static final java.lang.String CONVERSION_PLUGINS_DIR
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- Constant Field Values
CONVERSION_PLUGINS_PACKAGE
public static final java.lang.String CONVERSION_PLUGINS_PACKAGE
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- Constant Field Values
Constants
public Constants()
isGap
public static final boolean isGap(char c)