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Query: your_protein submitted on 2016.Dec.07, from urbion.cnb.csic.es
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Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPLHVKWPFPAVPPLTWTLASSVVMGLVGTYSCFWTKYMNHLTVHNREVLYELIEKRGPATPLITVSNHQSCMDDPHLWGILKLRHIWNLKLMRWTPAAADICFTKELHSHFFSLGKCVPVCRGAEFFQAENEGKGVLDTGRHMPGAGKRREKGDGVYQKGMDFILEKLNHGDWVHIFPEGKVNMSSEFLRFKWGIGRLIAECHLNPIILPLWHVGMNDVLPNSPPYFPRFGQKITVLIGKPFSALPVLERLRAENKSAVEMRKALTDFIQEEFQHLKTQAEQLHNHLQPGRLast
1 -36.5001k30_A mol:protein length:368 glycerol-3-phosphate acyltransferase  ali model follow..  15  90..........REPFDYYIFGQNYIRPLID---------FGNSFVGNLSLFKDIEEKLQQGHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFV--AGDRVLADPLCKPFSIGRNLICVY-----------------SKKHMFDIPELTETKRKANTRSLKEMALLLRGGQLIWIAPSGGRDRPDPSASSVDNMRRLIQHSDVPGHLFPLALLCHDIMPPPSQ-VEIEIGEGAGLSVAPEISFEEIAATHKNPEEVREAYSKALFDSVAMQYNVLKTAISGKQGLGAS.. 358
2 -9.5505f2t_A mol:protein length:308 Phosphatidylinositol mannoside acyltransferas  ali model follow..  11  49LRRNLARVVGKPPA---DVPDDLIRASLASYARYWREAFRQLDVIDIDHLWSALDA---GRGAVLALPHSG----------------------NWDMAGVWLVQNYGPFTTVAERLKPESLYR---------------RFVEYRESLGFEVLPLTGGERPPFEVLAERLTDNRPICLMAERDLTRSGVQVDF--GPAKLAIETGAA--LFPVHCW--------------FEGDGWGMRVYPELDTSS---------GDVTAITQALADRFAANIATYPADWHMLQPQWIA.. 288
3 -6.8405kn7_B mol:protein length:333 Lipid A biosynthesis lauroyl acyltransferase  ali model follow..  10  99..........................................RIEGEHFFHEALAA---KKGVVLIVPHFGTWENAWCAQFTSMTILYKPV-------------KNADADRFVREARLVPTDESG------------------------------------VRQIFKALKQGETTVILPDHTPNVGGDMVNYSNLSAKLIQKTKAK--ALFLYAIRNEN--------------------GFTMHIEPMDEKIYEG--TADDGTYVIHQAIEQLIYQYPEHYHWSYKRFKA.. 286
4 -6.4103ik5_A mol:protein length:143 Protein Nef  ali model follow..  14  28..........................................................................................................................................................................................SHFIKEKGGLEGIYY-SARRHRILDIYLEKEEGIIPDWQDYTSGPGIRYPKTFG-PVNVSDEAQEDEEHYLMHPAQTSQWDDPWGEVLA................. 120
5 -6.3901zjj_A mol:protein length:263 hypothetical protein PH1952  ali model follow..  11  19...........................................IPGVRELIEFLKE--RGIPFAFLTNNSTKTPEMYREKLLKMGIDVSSSIIITSGLA-----TRLYMSKHLDPGKIFVIGGEGLVKEMQALGWGIVTLDEARQGSWKEVKHDPDLTYEKLKYATLAIRNGAFIGTNPDATLPGEEGIYPGAGSIIAALVATNVEPIIIEPMYEVVREMFPGEELWMVGDRLDTDIAFAKKFGMKAIMVLTGVSSLEDIKKSEYKPDLVLPSVYELIDYLKTL........ 263
6 -6.3805sva_U mol:protein length:222 Mediator of RNA polymerase II transcription subunit 7  ali model follow..  14  85.................................................................................................................................................................VKDQLPDLESMGLTQLYKKSTENESTNYQYKIQELRKLLKS-------LLLNYLELIGVLSINPDMYERKVENIRTIL---VNIHHLLNEYR-----PHQSRESLIMLLEEQLEYKRGEIREIEQVCKQVH 200
7 -6.1702nef_A mol:protein length:136 NEGATIVE FACTOR (F-PROTEIN)  ali model follow..  21  33..........................................................................................................................................................................................SHFLKEKGGLEGLIH-SQRRQDILDLWIYHTQGYFPDWQNYTPGPGIRYPLTFG-PVEPEKLEEANKDDPEREVLEWRFDSRLAFHHMAR................ 126
8 -6.1504nee_E mol:protein length:155 Protein Nef  ali model follow..  22  1...........................................................................................................................................................GXXXXXXXXXXXXXEEEVGFPVTPQVPLRP-SHFLKEKGGLEGLIH-SQRRQDILDLWIYHTQGYFPDWQNYTPGPGVRYPLTFG-PVEPDKVEEANKGE..................................... 112
9 -6.1402x9l_A mol:protein length:273 N-ACYL GLM PEUDO-TEICOPLANIN DEACETYLASE  ali model follow..  12  1.....................................................MPHDPGATRLLAISPH---LDDAVL-AGLAQAAQDGANVLVYT------VFAGAAQPPYSPAAQRMHTIWG------LAPDDDAVLYRRKEDIAALDHLRVAHRHGRFLDSIYRKLPDGRWLTAHVEGRDSDHDLVGEVADDIRSIIDEFDPTLVVTCAAIGEPDHEATRDAALFATHEKNVPVRLWEDLPYAVFKSGAVELPQGFRLGSADVSSVKPEMRSQKFQAVERYSSQMV... 234
10 -5.9702mi2_A mol:protein length:109 Sec-independent protein translocase protein T  ali model follow..  14  2...............................................................................................................................................................................................FDIGFSELLL-------IIGLVVLGPQR--------LPVAVKTVAGWIRALRSLATTVQNELTQELKLQEFQDSLKKVEKASLTNLTPELKASMDELRQA. 88
FFAS is supported by the NIH grant R01-GM087218-01
8 5 8 2 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Robinson-Rechavi M, Alibes A, Godzik A. Contribution of electrostatic interactions, compactness and quaternary structure to protein thermostability: lessons from structural genomics of Thermotoga maritima. J Mol Biol. 2006 Feb 17;356(2):547-57. Epub 2005 Dec 7.