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Query: tafazzin submitted on 2011.Oct.25, from nevada.cnb.csic.es

Results of FFAS03 search in PDB0811
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools %idFirst MPLHVKWPFPAVPPLTWTLASSVVMGLVGTYSCFWTKYMNHLTVHNREVLYELIEKRGPATPLITVSNHQSCMDDPHLWGILKLRHIWNLKLMRWTPAAADICFTKELHSHFFSLGKCVPVCRGAEFFQAENEGKGVLDTGRHMPGAGKRREKGDGVYQKGMDFILEKLNHGDWVHIFPEGKVNMSSEFLRFKWGIGRLIAECHLNPIILPLWHVGMNDVLPNSPPYFPRFGQKITVLIGKPFSALPVLERLRAENKSAVEMRKALTDFIQEEFQHLKTQAEQLHNHLQPGRLast
1 -49.700 1k30_A mol:protein length:368 glycerol-3-phosphate acyltransferase  ali model follow..  15  106...................................LIDFGNSFVGNLSLFKDIEEKLQQGHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIF--VAGDRVLADPLCKPFSIGRNLICVYS-----------------KKHMFDIPELTETKRKANTRSLKEMALLLRGGQLIWIAPSGGRDRPDPPAPFDASMRRLIQHSDVPGHLFPLALLCHDIMPPPSQEKRVIAFNGAGLSVAPEISFEEIAATHKNPEEVREAYSKALFDSVAMQYNVLKTAISGKQGLGAS.. 358
2 -7.120 1zjj_A mol:protein length:263 hypothetical protein PH1952  ali model follow..  9  19...........................................IPGVRELIEFLKE--RGIPFAFLTNNSTKTPEMYREKLLKMGIDVSSSIIITSGLATRLYMSKHLDPGKIFVIGGEGLVKEMQALGWGIVTLDEARQGSWKEVKHVVVGLDPDLTYEKLKYATLAIRNGTFIGTNPDATLPGEEGIYPGAGSIAALKVATNVEPIIIEPMYEVVREMFPGEELWMVGDRLDTDIAFAKKFGMKAIMVLTGVSSLEDIKKSEYKPDLVLPSVYELIDYLKTL........ 263
3 -6.600 3bv6_A mol:protein length:379 Metal-dependent hydrolase  ali model follow..  8  123......................................................FAIKEIDAVLASHDHADHIDVNVAAAVLQN-------------CGEHVKFIGPWLGWGVPQERCIVAKVGDVLEDVKIRVLDSFDRTALVTLPKGVSSYDKAILDGMDERAVNYLIETSGGSVYHSGDSHYSNYY-------AKHGNDYQIDVALLSYGENPRGVTDKMTSSDVLRAAESLDCQVVVPFHHDIW-ANFQNDPREIEVLWNMKKDRLQYQFAPFFWQVGG......... 338
4 -6.200 2wyl_A mol:protein length:360 L-ASCORBATE-6-PHOSPHATE LACTONASE ULAG  ali model follow..  10  105......................................................FAIRQIDAVLATHDHNDHIDVNVAAAVMQN-------------CADDVPFIGPKTCVDLWIGWGVPKERDVVKVKDIEIHALDAFDRTALITLPADQKAAGVLPDGMDDRAVNYLFKTPGGSLYHSGDSHYSNYY-------AKHGNEHQIDVALGSYGENPRGITDKMTSADMLRMGEALNAKVVIPFHHDIW-SNFQADPQEIRVLWEMKKDRLKYGFKPFIWQVGG......... 319
5 -6.060 2zcw_A mol:protein length:202 Transcriptional regulator, FNR/CRP family  ali model follow..  16  7.....................................................................................................................................................................TVSFKAGDV--ILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTPGGFFGEEALFGQERIYFAEAATDVRLEP---------------PENPDPELLKDLAQHLSQGLAEAYRRIERLATQRLKNR 122
6 -5.910 3rpc_A mol:protein length:264 possible metal-dependent hydrolase  ali model follow..  9  59.....................................................DDLLSNVTAVVVTHTHLDHWDDTAINSIPKSLPIFVQNTADKELITSQGFIDVRIIFESLEFNGITGGSHGTVEMYANPVLAPLAGDAMGVIFEAADEPTVYLVGDTVWTSDVEKALLDPNVIIMNTGYAQILGFEDSIIMGTKDIGRMVVREAKIIAVHMDTVNHTATSRKDVRKFIKGNAVPEDGETITL............................................... 264
7 -5.830 2pzj_A mol:protein length:377 Putative nucleotide sugar epimerase/ dehydrat  ali model follow..  9  118........................................ENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQHQ-LPT---------VRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENGGVATRDFIFVEDVANGLIACAADGTPGGVYNIASGKETSIADLATKINEITGNNTELDRLPKRPWDNSGKRFGSPEKARRELDVSIDDGLRKTIEWTKANLA.......... 353
8 -5.800 1dbg_A mol:protein length:506 CHONDROITINASE B  ali model follow..  8  16...............................................................................................................................................VLLNVAPCLGQVVASNETLYQVVKEVKPGGLVQI-ADGTYK-DVQLIVSNSGKSG------------PITIKALNKVFFTGDAKVELRGEHLIL---EGIWFKDGNRAIQAWKSHGPGLVAIYGSYNRITACVFDC............. 137
9 -5.760 2k4v_A mol:protein length:125 uncharacterized protein PA1076  ali model follow..  14  30...................................................................................................................................................................EVRQNAESGAYVHFDMDGEIDPRDTAFNFASDATRVAQKHGLHPKFGAIT-----RVHKEYDAMFEDIRAKLHAHPGEPVDLERIIRHEGS...................................... 125
10 -5.710 2dl1_A mol:protein length:116 Spartin  ali model follow..  8  2................................................................................................................................................SSGSSGEPAEIKIIREAYKKAFLFVNKG----LNTDELGQKEEAKNYYKQGIGHLLRGISI------------------------------------SSKESEHTGPGWESARQMQQKMKETLQNVRTRLEILEKGLATSLQNDLQ.. 107
FFAS is supported by the NIH grant R01-GM087218-01
2 3 7 0 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;